SMTL ID : 1s9u.1

Atomic structure of a putative anaerobic dehydrogenase component

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: D.43, D.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.44 Water bridges: A:D.43 SO4.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 3 residues within 4Å: Chain A: I.80, P.82, A.84 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.85, A:L.85 PEG.4: 8 residues within 4Å: Chain A: F.13, H.147, C.150, E.151, L.154, W.192, Q.195, L.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.147, A:E.151 Water bridges: A:Q.195 PEG.5: 5 residues within 4Å: Chain A: Y.25, Y.26, S.133, L.136, L.137 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.18 PEG.6: 1 residues within 4Å: Chain A: R.77 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.77 PEG.7: 3 residues within 4Å: Chain A: E.32, P.35, L.36 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, Y. et al., The 1.38 A crystal structure of DmsD protein from Salmonella typhimurium, a proofreading chaperone on the Tat pathway. Proteins (2008)

Release Date

2004-06-08

Peptides

putative component of anaerobic dehydrogenases: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

putative component of anaerobic dehydrogenases