SMTL ID : 1si2.1

Crystal structure of the PAZ domain of human eIF2c1 in complex with a 9-mer siRNA-like duplex of deoxynucleotide overhang

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x C- G- U- G- A- C- U- DC- DT: 5'-R(*CP*GP*UP*GP*AP*CP*U)-D(P*CP*T)-3'(Non-covalent)

C-G-U-G-A-C-U-DC-DT.1: 31 residues within 4Å: Chain A: K.44, H.49, M.53, R.55, R.58, F.72, P.73, L.74, Y.89, F.90, Y.94, Q.110, K.113, H.114, T.115, Y.116, L.117, G.127, Q.128, R.129 Chain B: Q.52, M.53, K.54, R.55 Ligands: C-G-U-G-A-C-U-DC-DT.2, C-G-U-G-A-C-U-DC-DT.2, C-G-U-G-A-C-U-DC-DT.2, C-G-U-G-A-C-U-DC-DT.2, C-G-U-G-A-C-U-DC-DT.2, C-G-U-G-A-C-U-DC-DT.2, C-G-U-G-A-C-U-DC-DT.2 Protein-ligand interaction information (PLIP) not available C-G-U-G-A-C-U-DC-DT.2: 31 residues within 4Å: Chain A: Q.52, M.53, K.54, R.55 Chain B: K.44, H.49, M.53, R.55, R.58, F.72, P.73, L.74, Y.89, F.90, Y.94, Q.110, K.113, H.114, T.115, Y.116, L.117, G.127, Q.128, R.129 Ligands: C-G-U-G-A-C-U-DC-DT.1, C-G-U-G-A-C-U-DC-DT.1, C-G-U-G-A-C-U-DC-DT.1, C-G-U-G-A-C-U-DC-DT.1, C-G-U-G-A-C-U-DC-DT.1, C-G-U-G-A-C-U-DC-DT.1, C-G-U-G-A-C-U-DC-DT.1 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, J.B. et al., Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain. Nature (2004)

Release Date

2004-05-25

Peptides

Eukaryotic translation initiation factor 2C 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Eukaryotic translation initiation factor 2C 1

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