SMTL ID : 1sr4.1

Crystal Structure of the Haemophilus ducreyi cytolethal distending toxin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-oligomer

Ligands

26 x BR: BROMIDE ION(Non-covalent)

BR.1: 5 residues within 4Å: Chain B: H.113, S.114, S.121, R.122, P.123 Ligand excluded by PLIP BR.2: 1 residues within 4Å: Chain B: H.224 Ligand excluded by PLIP BR.3: 3 residues within 4Å: Chain A: N.95, Q.115, S.116 Ligand excluded by PLIP BR.4: 1 residues within 4Å: Chain B: Q.105 Ligand excluded by PLIP BR.5: 2 residues within 4Å: Chain A: W.74, W.83 Ligand excluded by PLIP BR.6: 3 residues within 4Å: Chain C: K.69, G.72, A.73 Ligand excluded by PLIP BR.7: 2 residues within 4Å: Chain A: P.57, Q.115 Ligand excluded by PLIP BR.8: 3 residues within 4Å: Chain A: S.55, N.59 Chain B: E.34 Ligand excluded by PLIP BR.9: 4 residues within 4Å: Chain B: G.62, G.63, T.64, I.111 Ligand excluded by PLIP BR.10: 2 residues within 4Å: Chain A: A.75, L.76 Ligand excluded by PLIP BR.11: 2 residues within 4Å: Chain A: A.77, K.78 Ligand excluded by PLIP BR.12: 3 residues within 4Å: Chain B: V.53, T.70, M.81 Ligand excluded by PLIP BR.13: 2 residues within 4Å: Chain A: P.103 Ligands: BR.22 Ligand excluded by PLIP BR.14: 1 residues within 4Å: Chain C: P.30 Ligand excluded by PLIP BR.15: 1 residues within 4Å: Chain A: Y.124 Ligand excluded by PLIP BR.16: 2 residues within 4Å: Chain C: A.73, A.74 Ligand excluded by PLIP BR.17: 5 residues within 4Å: Chain A: R.50, V.52, L.53, P.54 Chain B: R.78 Ligand excluded by PLIP BR.18: 2 residues within 4Å: Chain A: N.41, S.44 Ligand excluded by PLIP BR.19: 2 residues within 4Å: Chain B: E.197, R.228 Ligand excluded by PLIP BR.20: 3 residues within 4Å: Chain B: T.75, R.76, S.77 Ligand excluded by PLIP BR.21: 2 residues within 4Å: Chain B: P.182, A.183 Ligand excluded by PLIP BR.22: 3 residues within 4Å: Chain B: V.258, R.259 Ligands: BR.13 Ligand excluded by PLIP BR.23: 2 residues within 4Å: Chain B: H.138, N.179 Ligand excluded by PLIP BR.24: 2 residues within 4Å: Chain C: P.128, G.130 Ligand excluded by PLIP BR.25: 2 residues within 4Å: Chain A: H.106, R.107 Ligand excluded by PLIP BR.26: 3 residues within 4Å: Chain A: D.182 Chain C: K.154, I.155 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nesic, D. et al., Assembly and Function of a Bacterial Genotoxin. Nature (2004)

Release Date

2004-06-15

Peptides

Cytolethal distending toxin subunit A: A
cytolethal distending toxin protein B: B
cytolethal distending toxin protein C: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Cytolethal distending toxin subunit A

cytolethal distending toxin protein B

cytolethal distending toxin protein C