SMTL ID : 1suf.1

Carbon Monoxide Dehydrogenase from Carboxydothermus hydrogenoformans-Inactive state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

homo-dimer

Ligands

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 12 residues within 4Å: Chain A: C.48, H.50, C.51, Q.53, G.54, C.56, G.68, I.69, C.70, A.72, R.80, M.199 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.48, A:C.51, A:C.56, A:C.70 SF4.4: 12 residues within 4Å: Chain B: C.48, H.50, C.51, Q.53, G.54, C.56, G.68, I.69, C.70, A.72, R.80, M.199 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.48, B:C.51, B:C.56, B:C.70

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.2: 8 residues within 4Å: Chain A: C.39, F.41, G.42, C.47 Chain B: C.39, C.47, R.49 Ligands: FES.5 2 PLIP interactions: 2 interactions with chain A, Metal complexes: A:C.39, A:C.47 FES.5: 8 residues within 4Å: Chain A: C.39, C.47, R.49 Chain B: C.39, F.41, G.42, C.47 Ligands: FES.2 2 PLIP interactions: 2 interactions with chain B, Metal complexes: B:C.39, B:C.47

2 x NFS: FE(4)-NI(1)-S(5) CLUSTER(Non-covalent)

NFS.3: 12 residues within 4Å: Chain A: H.261, C.294, C.295, S.312, C.333, G.445, C.446, C.476, C.526, M.560, H.561, K.563 10 PLIP interactions: 6 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.261, A:C.295, A:C.333, A:C.446, A:C.476, A:C.526, H2O.31, H2O.31, H2O.39, H2O.39 NFS.6: 12 residues within 4Å: Chain B: H.261, C.294, C.295, S.312, C.333, G.445, C.446, C.476, C.526, M.560, H.561, K.563 10 PLIP interactions: 6 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:H.261, B:C.295, B:C.333, B:C.446, B:C.476, B:C.526, H2O.72, H2O.72, H2O.80, H2O.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dobbek, H. et al., Carbon Monoxide Induced Decomposition of the Active Site [Ni-4Fe-5S] Cluster of CO Dehydrogenase. J.Am.Chem.Soc. (2004)

Release Date

2004-05-11

Peptides

Carbon Monoxide Dehydrogenase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Carbon Monoxide Dehydrogenase 2

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