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SMTL ID : 1t0i.1
(1 other biounit)
YLR011wp, a Saccharomyces cerevisiae NA(D)PH-dependent FMN reductase
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.00 Å
Oligo State
homo-dimer
Ligands
2 x
CA
:
CALCIUM ION
(Non-covalent)
CA.1:
2 residues within 4Å:
Chain A:
D.134
,
E.138
4
PLIP interactions
:
3 interactions with chain A
,
1 Ligand-Water interactions
Metal complexes:
A:D.134
,
A:D.134
,
A:E.138
,
H
2
O.3
CA.2:
1 residues within 4Å:
Chain A:
D.134
3
PLIP interactions
:
1 interactions with chain A
,
2 Ligand-Water interactions
Metal complexes:
A:D.134
,
H
2
O.1
,
H
2
O.1
2 x
FMN
:
FLAVIN MONONUCLEOTIDE
(Non-covalent)
FMN.3:
16 residues within 4Å:
Chain A:
S.9
,
R.11
,
R.14
,
V.15
,
C.16
,
P.93
,
Q.94
,
Y.95
,
N.96
,
W.97
,
Y.124
,
G.125
,
G.126
,
V.157
Chain B:
I.60
,
D.108
18
PLIP interactions
:
16 interactions with chain A
,
2 interactions with chain B
Hydrophobic interactions:
A:Y.95
,
A:Y.95
,
B:I.60
,
B:I.60
Hydrogen bonds:
A:S.9
,
A:R.11
,
A:V.15
,
A:C.16
,
A:Q.94
,
A:Y.95
,
A:Y.95
,
A:N.96
,
A:W.97
,
A:Y.124
,
A:G.126
Water bridges:
A:H.127
,
A:G.158
Salt bridges:
A:R.11
FMN.4:
17 residues within 4Å:
Chain A:
I.60
,
D.108
Chain B:
S.9
,
R.11
,
R.14
,
V.15
,
C.16
,
P.93
,
Q.94
,
Y.95
,
N.96
,
W.97
,
Y.124
,
G.125
,
G.126
,
V.157
,
I.160
20
PLIP interactions
:
18 interactions with chain B
,
2 interactions with chain A
Hydrophobic interactions:
B:Y.95
,
B:Y.95
,
B:Y.95
,
B:Y.95
,
A:I.60
,
A:D.108
Hydrogen bonds:
B:S.9
,
B:R.11
,
B:V.15
,
B:C.16
,
B:Q.94
,
B:Y.95
,
B:N.96
,
B:W.97
,
B:G.126
Water bridges:
B:H.127
,
B:G.158
,
B:G.158
,
B:G.158
Salt bridges:
B:R.11
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Liger, D. et al., Crystal Structure and Functional Characterization of Yeast YLR011wp, an Enzyme with NAD(P)H-FMN and Ferric Iron Reductase Activities. J.Biol.Chem. (2004)
Release Date
2004-06-22
Peptides
YLR011wp:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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YLR011wp
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1t0i.2
Cartoon
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Ball+Stick
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Hyperball
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Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
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High
Extreme