SMTL ID : 1t1r.1

Crystal Structure of the Reductoisomerase Complexed with a Bisphosphonate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: G.185, S.186, H.209, S.222, N.227, K.228 Ligands: IMB.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.186, A:S.186, A:S.222, A:N.227 Salt bridges: A:H.209, A:K.228 SO4.3: 8 residues within 4Å: Chain B: G.185, S.186, H.209, W.212, S.222, N.227, K.228 Ligands: IMB.4 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.186, B:S.186, B:S.222, B:N.227, B:N.227 Salt bridges: B:H.209, B:K.228

2 x IMB: [(ISOQUINOLIN-1-YLAMINO)-PHOSPHONO-METHYL]-PHOSPHONIC ACID(Non-covalent)

IMB.2: 13 residues within 4Å: Chain A: K.125, D.150, S.151, E.152, W.212, M.214, I.218, N.227, K.228, E.231, P.274, M.276 Ligands: SO4.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.125, A:D.150, A:S.151, A:S.151, A:E.152, A:N.227, A:K.228, A:E.231 pi-Stacking: A:W.212, A:W.212 IMB.4: 12 residues within 4Å: Chain B: K.125, D.150, S.151, E.152, W.212, M.214, N.227, K.228, E.231, P.274, M.276 Ligands: SO4.3 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:P.274 Hydrogen bonds: B:K.125, B:S.151, B:S.151, B:E.152, B:K.228, B:E.231, B:E.231 pi-Stacking: B:W.212, B:W.212, B:W.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yajima, S. et al., Crystallographic Structures of Two Bisphosphonate:1-Deoxyxylulose-5-Phosphate Reductoisomerase Complexes. J.Am.Chem.Soc. (2004)

Release Date

2004-09-14

Peptides

1-deoxy-D-xylulose 5-phosphate reductoisomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

1-deoxy-D-xylulose 5-phosphate reductoisomerase

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