SMTL ID : 1t60.2 (3 other biounits)

Crystal structure of Type IV collagen NC1 domain from bovine lens capsule

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-4-2-mer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 5 residues within 4Å: Chain A: Y.189 Chain C: Y.63, N.65 Chain E: Y.185, A.186 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:Y.189 K.3: 5 residues within 4Å: Chain B: F.64, N.66 Chain C: Y.187 Chain F: Y.183, A.184 No protein-ligand interaction detected (PLIP) K.4: 5 residues within 4Å: Chain C: Y.183, A.184 Chain E: F.64, N.66 Chain F: Y.187 No protein-ligand interaction detected (PLIP) K.8: 6 residues within 4Å: Chain B: Y.185, A.186 Chain D: Y.189 Chain F: Y.63, N.65, Y.71 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain F Metal complexes: D:Y.189, F:Y.63

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: A.74, S.75, R.76, N.77, D.78, G.178 Chain D: R.179 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain C: A.73, S.74, R.75, N.76, D.77 Ligand excluded by PLIP CL.6: 7 residues within 4Å: Chain A: R.179 Chain D: A.74, S.75, R.76, N.77, D.78, G.178 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain F: A.73, S.74, R.75, N.76, D.77 Ligand excluded by PLIP

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.7: 8 residues within 4Å: Chain A: N.68 Chain D: M.89, M.93, Y.184, Y.185, A.186 Chain F: P.66, G.67 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:P.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vanacore, R.M. et al., The alpha1.alpha2 network of collagen IV. Reinforced stabilization of the noncollagenous domain-1 by noncovalent forces and the absence of Met-Lys cross-links. J.Biol.Chem. (2004)

Release Date

2004-09-21

Peptides

type iv collagen: ABDE
type iv collagen: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

D
J

E
K

C
I

F
L

type iv collagen

type iv collagen

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