SMTL ID : 1t60.3 (3 other biounits)

Crystal structure of Type IV collagen NC1 domain from bovine lens capsule

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-4-2-mer

Ligands

4 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: Y.189 Chain C: Y.63, N.65 Chain E: A.186 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:Y.189 K.5: 6 residues within 4Å: Chain B: F.64, N.66, N.72 Chain C: Y.187 Chain F: Y.183, A.184 No protein-ligand interaction detected (PLIP) K.6: 5 residues within 4Å: Chain C: Y.183, A.184 Chain E: F.64, N.66 Chain F: Y.187 No protein-ligand interaction detected (PLIP) K.8: 6 residues within 4Å: Chain B: Y.185, A.186 Chain D: Y.189 Chain F: Y.63, N.65, Y.71 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:Y.189

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: A.74, S.75, R.76, N.77, D.78, G.178 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain C: A.73, S.74, R.75, N.76, D.77 Ligand excluded by PLIP CL.9: 6 residues within 4Å: Chain D: A.74, S.75, R.76, N.77, D.78, G.178 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain F: A.73, S.74, R.75, N.76, D.77 Ligand excluded by PLIP

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 6 residues within 4Å: Chain A: V.120, H.121, Q.129, P.131 Chain C: W.27, A.54 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:W.27, C:A.54, A:V.120, A:P.131 MPD.4: 8 residues within 4Å: Chain A: M.89, M.93, Y.184, Y.185, A.186 Chain C: P.66, G.67 Chain D: N.68 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:N.68 Hydrophobic interactions: C:P.66 MPD.10: 5 residues within 4Å: Chain D: V.120, Q.129 Chain F: L.26, W.27, A.54 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain F Hydrophobic interactions: D:V.120, D:Q.129, F:W.27, F:A.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vanacore, R.M. et al., The alpha1.alpha2 network of collagen IV. Reinforced stabilization of the noncollagenous domain-1 by noncovalent forces and the absence of Met-Lys cross-links. J.Biol.Chem. (2004)

Release Date

2004-09-21

Peptides

type iv collagen: ABDE
type iv collagen: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
N

D
P

E
Q

C
O

F
R

type iv collagen

type iv collagen

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