SMTL ID : 1tez.3 (3 other biounits)

COMPLEX BETWEEN DNA AND THE DNA PHOTOLYASE FROM ANACYSTIS NIDULANS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x DT- DC- DG- DC: 5'-D(*TP*CP*GP*C)-3'(Non-covalent)

DT-DC-DG-DC.1: 8 residues within 4Å: Chain A: R.349, I.404, F.405, N.406, S.409, Q.410, K.413, Q.460 Protein-ligand interaction information (PLIP) not available

1 x DG- DC- DC- DG- DA: 5'-D(P*GP*CP*CP*GP*A)-3'(Non-covalent)

DG-DC-DC-DG-DA.2: 7 residues within 4Å: Chain A: S.139, G.140, Y.145, S.146, V.147, P.150, K.471 Protein-ligand interaction information (PLIP) not available

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.3: 27 residues within 4Å: Chain A: Y.227, T.239, S.240, G.241, L.242, S.243, L.246, W.279, E.282, L.283, R.286, Y.289, W.345, M.346, N.348, R.351, M.352, A.355, F.373, L.377, D.379, G.380, D.381, A.384, N.385, G.388, W.389 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:R.351, A:A.355, A:F.373, A:F.373 Hydrogen bonds: A:Y.227, A:S.240, A:G.241, A:L.242, A:S.243, A:S.243, A:E.282, A:N.348, A:N.348, A:R.351, A:D.379, A:D.381 Water bridges: A:T.239, A:S.243, A:E.282, A:Y.289, A:Y.289, A:N.348, A:N.348 pi-Cation interactions: A:R.351

1 x HDF: 8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE(Non-covalent)

HDF.4: 17 residues within 4Å: Chain A: R.9, F.34, C.35, L.36, D.37, I.40, L.41, M.46, R.50, L.54, D.100, E.102, Y.104, G.105, R.108, K.247, F.248 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.34, A:I.40, A:I.40, A:L.41, A:L.54, A:F.248, A:F.248 Hydrogen bonds: A:C.35, A:D.37, A:R.50, A:D.100, A:E.102, A:G.105, A:R.108, A:R.108, A:K.247 Water bridges: A:C.35, A:R.50, A:E.102, A:R.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mees, A. et al., Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair. Science (2004)

Release Date

2004-12-14

Peptides

Deoxyribodipyrimidine photolyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Deoxyribodipyrimidine photolyase

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