SMTL ID : 1th3.1

Crystal structure of NADPH depleted bovine live catalase complexed with cyanide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

2 x CYN: CYANIDE ION(Non-covalent)

CYN.1: 4 residues within 4Å: Chain A: H.74, F.160, Y.357 Ligands: HEM.2 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.147 CYN.5: 5 residues within 4Å: Chain D: V.73, H.74, F.160, Y.357 Ligands: HEM.6 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.74

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)

HEM.2: 24 residues within 4Å: Chain A: R.71, V.72, V.73, H.74, R.111, G.130, F.131, V.145, G.146, N.147, F.160, H.217, L.298, F.333, M.349, R.353, A.356, Y.357, T.360, H.361, R.364 Chain D: M.60, D.64 Ligands: CYN.1 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:V.72, A:H.74, A:V.145, A:N.147, A:F.160, A:F.160, A:L.298, A:M.349, A:R.353, A:A.356, A:Y.357, A:Y.357 Salt bridges: A:R.71, A:R.71, A:R.111, A:H.361, A:R.364 pi-Stacking: A:H.74 pi-Cation interactions: A:R.353 Metal complexes: A:Y.357 HEM.3: 23 residues within 4Å: Chain B: R.71, V.73, H.74, R.111, G.130, V.145, G.146, N.147, F.160, S.216, H.217, L.298, L.331, F.333, M.349, R.353, A.356, Y.357, T.360, H.361, R.364 Chain C: M.60, D.64 22 PLIP interactions: 22 interactions with chain B, Hydrophobic interactions: B:H.74, B:V.145, B:N.147, B:F.160, B:F.160, B:F.160, B:F.160, B:L.298, B:F.333, B:M.349, B:R.353, B:Y.357 Water bridges: B:V.72, B:F.333 Salt bridges: B:R.71, B:R.71, B:R.111, B:H.361, B:R.364 pi-Stacking: B:H.74 pi-Cation interactions: B:R.353 Metal complexes: B:Y.357 HEM.4: 24 residues within 4Å: Chain B: M.60, D.64 Chain C: R.71, V.72, V.73, H.74, R.111, G.130, F.131, A.132, V.145, G.146, N.147, F.152, F.160, L.331, F.333, M.349, R.353, A.356, Y.357, T.360, H.361, R.364 22 PLIP interactions: 22 interactions with chain C, Hydrophobic interactions: C:V.72, C:V.73, C:H.74, C:A.132, C:N.147, C:F.152, C:F.160, C:F.160, C:F.160, C:F.160, C:F.333, C:A.356, C:Y.357, C:T.360 Salt bridges: C:R.71, C:R.71, C:R.111, C:H.361, C:R.364 pi-Stacking: C:H.74 pi-Cation interactions: C:R.353 Metal complexes: C:Y.357 HEM.6: 24 residues within 4Å: Chain A: M.60, D.64 Chain D: R.71, V.73, H.74, R.111, G.130, V.145, G.146, N.147, A.157, F.160, G.215, S.216, H.217, L.298, F.333, M.349, R.353, Y.357, T.360, H.361, R.364 Ligands: CYN.5 20 PLIP interactions: 20 interactions with chain D, Hydrophobic interactions: D:V.73, D:V.145, D:A.157, D:F.160, D:F.160, D:F.160, D:F.160, D:L.298, D:R.353, D:T.360 Water bridges: D:T.360 Salt bridges: D:R.71, D:R.71, D:R.111, D:H.361, D:R.364 pi-Stacking: D:H.74, D:F.160 pi-Cation interactions: D:R.353 Metal complexes: D:Y.357

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugadev, R. et al., The crystal structure of bovine liver catalase. TO BE PUBLISHED

Release Date

2005-07-05

Peptides

Catalase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Catalase

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