SMTL ID : 1tj7.2 (1 other biounit)

Structure determination and refinement at 2.44 A resolution of Argininosuccinate lyase from E. coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: S.108, R.109, N.110 Chain B: G.276, S.277, S.278 Ligands: PO4.4 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:G.276, B:S.278, A:R.109, A:N.110 Salt bridges: A:R.109 PO4.4: 9 residues within 4Å: Chain A: N.110, Y.317 Chain B: S.277, M.280, K.283, N.285 Chain C: T.155, H.156 Ligands: PO4.1 6 PLIP interactions: 4 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: B:S.277, B:N.285, B:N.285, A:N.110 Salt bridges: B:K.283, C:H.156 PO4.6: 7 residues within 4Å: Chain C: S.108, R.109, N.110 Chain D: G.276, S.277, S.278 Ligands: PO4.9 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:G.276, D:S.278, C:R.109, C:N.110, C:N.110 Salt bridges: C:R.109 PO4.9: 9 residues within 4Å: Chain A: T.155, H.156 Chain C: N.110, Y.317 Chain D: S.277, M.280, K.283, N.285 Ligands: PO4.6 7 PLIP interactions: 2 interactions with chain A, 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: A:T.155, D:S.277, D:N.285, D:N.285, C:N.110 Salt bridges: A:H.156, D:K.283

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: Y.205 Chain C: D.372, A.376, K.433 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:K.433, A:Y.205, A:Y.205 Water bridges: C:D.372 GOL.3: 10 residues within 4Å: Chain A: L.200, L.226, P.314, L.315, A.316 Chain C: G.153, Y.154, W.168, D.255, F.259 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:Y.154, C:Y.154, C:W.168, C:D.255, A:L.315 GOL.5: 9 residues within 4Å: Chain B: G.153, Y.154, W.168, D.255, F.259 Chain D: L.200, P.314, L.315, A.316 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:L.315, B:Y.154, B:W.168 GOL.7: 4 residues within 4Å: Chain A: D.372, A.376, K.433 Chain C: Y.205 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:Y.205, A:K.433 Water bridges: A:D.372, A:D.372 GOL.8: 10 residues within 4Å: Chain A: G.153, Y.154, W.168, D.255, F.259 Chain C: L.200, L.226, P.314, L.315, A.316 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain A Hydrogen bonds: C:L.315, A:Y.154, A:Y.154, A:W.168, A:D.255 GOL.10: 9 residues within 4Å: Chain B: L.200, P.314, L.315, A.316 Chain D: G.153, Y.154, W.168, D.255, F.259 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:L.315, D:Y.154, D:W.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhaumik, P. et al., Structure determination and refinement at 2.44 A resolution of argininosuccinate lyase from Escherichia coli. Acta Crystallogr.,Sect.D (2004)

Release Date

2004-10-26

Peptides

Argininosuccinate lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Argininosuccinate lyase

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