SMTL ID : 1tv5.1 (1 other biounit)

Plasmodium falciparum dihydroorotate dehydrogenase with a bound inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.67, Y.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.68, A:Y.68 Salt bridges: A:K.67

1 x A26: (2Z)-2-cyano-3-hydroxy-N-[4-(trifluoromethyl)phenyl]but-2-enamide(Non-covalent)

A26.2: 13 residues within 4Å: Chain A: F.45, L.46, G.55, H.59, F.62, F.101, I.137, R.139, Y.402, V.406, G.409, M.410 Ligands: FMN.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.46, A:H.59, A:F.62, A:F.62, A:I.137, A:R.139, A:V.406 Hydrogen bonds: A:H.59, A:R.139

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.3: 26 residues within 4Å: Chain A: A.98, A.99, G.100, K.103, G.122, T.123, I.137, I.146, N.148, C.150, S.185, N.216, K.303, S.331, N.332, T.333, S.351, G.352, L.355, S.379, G.380, G.381, Y.402, S.403 Ligands: A26.2, ORO.4 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:I.137, A:I.146, A:N.148, A:Y.402 Hydrogen bonds: A:A.99, A:K.103, A:T.123, A:S.185, A:N.216, A:K.303, A:K.303, A:N.332, A:S.351, A:G.352, A:S.379, A:G.380, A:G.381, A:Y.402, A:S.403, A:S.403 Water bridges: A:A.99, A:T.123, A:I.382, A:I.382, A:I.382, A:Q.400 pi-Stacking: A:Y.402

1 x ORO: OROTIC ACID(Non-covalent)

ORO.4: 11 residues within 4Å: Chain A: K.103, N.148, C.150, G.151, F.152, N.216, S.219, N.221, N.332, T.333 Ligands: FMN.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.152 Hydrogen bonds: A:N.148, A:N.148, A:G.151, A:F.152, A:N.216, A:S.219, A:N.221, A:N.332, A:N.332 Salt bridges: A:K.103

2 x N8E: 3,6,9,12,15-PENTAOXATRICOSAN-1-OL(Non-covalent)

N8E.5: 4 residues within 4Å: Chain A: D.43, I.44, L.46, K.47 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.44 Hydrogen bonds: A:K.47 N8E.6: 5 residues within 4Å: Chain A: I.44, F.45, F.48, L.65, I.70 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.44, A:F.48 Water bridges: A:Y.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hurt, D.E. et al., Structure of Plasmodium falciparum dihydroorotate dehydrogenase with a bound inhibitor. Acta Crystallogr.,Sect.D (2006)

Release Date

2005-09-06

Peptides

Dihydroorotate dehydrogenase homolog, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydroorotate dehydrogenase homolog, mitochondrial

Related Entries With Identical Sequence