SMTL ID : 1twi.1 (2 other biounits)

Crystal structure of Diaminopimelate Decarboxylase from m. jannaschii in co-complex with L-lysine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.1: 16 residues within 4Å: Chain A: A.67, K.69, D.88, N.111, R.158, H.208, H.210, S.213, G.249, G.250, E.290, P.291, G.292, R.293, Y.387 Chain B: C.358 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.67, A:K.69, A:H.210 Hydrogen bonds: A:G.249, A:G.250, A:G.292, A:R.293, A:Y.387, A:Y.387 Water bridges: A:Q.214, B:C.358 pi-Stacking: A:H.210 PLP.2: 15 residues within 4Å: Chain A: C.358 Chain B: A.67, K.69, D.88, N.111, H.208, H.210, S.213, G.249, G.250, E.290, P.291, G.292, R.293, Y.387 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.67, B:K.69, B:H.210 Hydrogen bonds: B:G.249, B:G.250, B:G.292, B:R.293, B:Y.387, B:Y.387 Water bridges: B:K.69, B:Q.214, B:S.294, A:C.358 pi-Stacking: B:H.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajashankar, K.R. et al., Cocrystal structures of diaminopimelate decarboxylase: mechanism, evolution, and inhibition of an antibiotic resistance accessory factor. Structure (2002)

Release Date

2004-07-27

Peptides

Diaminopimelate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Diaminopimelate decarboxylase

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