SMTL ID : 1txg.1

Structure of glycerol-3-phosphate dehydrogenase from Archaeoglobus fulgidus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.53, N.55 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.55 Water bridges: A:K.53, A:K.53 SO4.2: 3 residues within 4Å: Chain A: K.105, K.192, N.193 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.193 Water bridges: A:K.105, A:K.105, A:K.192 Salt bridges: A:K.105, A:K.192 SO4.3: 3 residues within 4Å: Chain A: R.256, G.257, G.258 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.258 Water bridges: A:R.256, A:R.256, A:R.256 Salt bridges: A:R.256 SO4.4: 3 residues within 4Å: Chain A: R.203, R.256 Ligands: GOL.5 7 PLIP interactions: 7 interactions with chain A Water bridges: A:E.206, A:E.206, A:K.217, A:R.256, A:R.256 Salt bridges: A:K.217, A:R.256 SO4.6: 2 residues within 4Å: Chain B: N.55, R.147 6 PLIP interactions: 6 interactions with chain B Water bridges: B:N.55, B:R.147, B:R.147, B:R.147, B:R.147 Salt bridges: B:R.147 SO4.7: 3 residues within 4Å: Chain B: R.256, G.257, G.258 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.256, B:G.258 Water bridges: B:R.203, B:R.203, B:R.256, B:R.256 Salt bridges: B:R.256 SO4.8: 3 residues within 4Å: Chain B: K.105, K.192, N.193 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.193 Water bridges: B:K.105, B:N.193, B:N.260, B:N.260, B:N.260 Salt bridges: B:K.105, B:K.192 SO4.9: 2 residues within 4Å: Chain B: G.258, R.259 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.259 Salt bridges: B:R.259

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain A: I.199, A.200, R.203, K.217, F.255, R.256 Ligands: SO4.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.203, A:K.217, A:F.255 Water bridges: A:K.217, A:R.256 GOL.11: 5 residues within 4Å: Chain B: I.199, A.200, R.203, K.217, F.255 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.203, B:K.217, B:F.255 Water bridges: B:K.217, B:R.256

1 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.10: 4 residues within 4Å: Chain B: V.114, L.115, T.116, E.119 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.114, B:T.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sakasegawa, S. et al., Structural and functional analysis of the gpsA gene product of Archaeoglobus fulgidus: A glycerol-3-phosphate dehydrogenase with an unusual NADP+ preference. Protein Sci. (2004)

Release Date

2004-12-07

Peptides

glycerol-3-phosphate dehydrogenase [NAD(P)+]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

glycerol-3-phosphate dehydrogenase [NAD(P)+]