SMTL ID : 1u3c.1

Crystal Structure of the PHR domain of Cryptochrome 1 from Arabidopsis thaliana

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.359 Ligands: FAD.5, HEZ.7 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.359, H2O.3 MG.2: 7 residues within 4Å: Chain A: N.238, R.239, K.241, T.246, T.247, H.358 Ligands: MG.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:N.238, A:T.246 MG.3: 5 residues within 4Å: Chain A: K.241, S.244, T.246, H.358 Ligands: MG.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.244, A:T.246

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain A: H.318 Ligand excluded by PLIP

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.5: 29 residues within 4Å: Chain A: Y.235, T.247, S.248, F.249, L.250, S.251, L.254, F.290, S.293, I.294, L.296, R.297, W.356, L.357, D.359, R.362, V.363, S.366, F.384, L.388, D.390, A.391, D.392, S.395, D.396, G.399, W.400 Ligands: MG.1, HEZ.7 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:V.363, A:F.384, A:F.384 Hydrogen bonds: A:S.248, A:F.249, A:L.250, A:S.251, A:S.251, A:S.293, A:D.359, A:D.359, A:D.359, A:R.362, A:D.390, A:D.392, A:S.395 Water bridges: A:D.359, A:S.395 pi-Cation interactions: A:R.362, A:R.362

1 x NDS: ETHYL DIMETHYL AMMONIO PROPANE SULFONATE(Non-covalent)

NDS.6: 7 residues within 4Å: Chain A: A.212, W.213, S.214, N.219, A.223, F.249, H.253 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.249 Hydrogen bonds: A:S.214, A:S.214 Salt bridges: A:K.222, A:H.253 pi-Cation interactions: A:W.213, A:F.249

1 x HEZ: HEXANE-1,6-DIOL(Non-covalent)

HEZ.7: 8 residues within 4Å: Chain A: L.296, D.359, L.398, G.399, Y.402, D.409 Ligands: MG.1, FAD.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.296, A:L.398, A:Y.402, A:Y.402 Hydrogen bonds: A:D.409

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brautigam, C.A. et al., Structure of the photolyase-like domain of cryptochrome 1 from Arabidopsis thaliana. Proc.Natl.Acad.Sci.USA (2004)

Release Date

2004-08-24

Peptides

Cryptochrome 1 apoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cryptochrome 1 apoprotein

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