SMTL ID : 1u43.1

IspF with 4-diphosphocytidyl-2c-methyl-D-erythritol 2-phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-trimer

Ligands

3 x SUD: 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL 2-PHOSPHATE(Non-covalent)

SUD.1: 26 residues within 4Å: Chain A: D.8, H.10, A.33, H.34, S.35, G.37, H.42, D.56, I.57, G.58, K.59, F.61, P.62, D.63, F.68, L.76 Chain B: A.100, Q.101, A.102, P.103, K.104, M.105, L.106, A.131, T.132, T.133 19 PLIP interactions: 6 interactions with chain B, 13 interactions with chain A Hydrophobic interactions: B:T.133, A:I.57, A:L.76 Hydrogen bonds: B:A.100, B:M.105, B:L.106, B:T.132, B:T.133, A:D.8, A:H.34, A:H.34, A:S.35, A:S.35, A:D.56, A:D.63, A:D.63, A:D.63 Salt bridges: A:H.10, A:H.42 SUD.2: 26 residues within 4Å: Chain B: D.8, H.10, A.33, H.34, S.35, G.37, H.42, D.56, I.57, G.58, K.59, F.61, P.62, D.63, F.68, L.76 Chain C: A.100, Q.101, A.102, P.103, K.104, M.105, L.106, A.131, T.132, T.133 18 PLIP interactions: 13 interactions with chain B, 5 interactions with chain C Hydrophobic interactions: B:I.57, B:L.76, C:T.133 Hydrogen bonds: B:D.8, B:H.34, B:H.34, B:S.35, B:S.35, B:D.56, B:D.63, B:D.63, B:D.63, C:A.100, C:M.105, C:L.106, C:T.133 Salt bridges: B:H.10, B:H.42 SUD.3: 26 residues within 4Å: Chain A: A.100, Q.101, A.102, P.103, K.104, M.105, L.106, A.131, T.132, T.133 Chain C: D.8, H.10, A.33, H.34, S.35, G.37, H.42, D.56, I.57, G.58, K.59, F.61, P.62, D.63, F.68, L.76 20 PLIP interactions: 14 interactions with chain C, 6 interactions with chain A Hydrophobic interactions: C:I.57, C:L.76, A:T.133 Hydrogen bonds: C:D.8, C:H.34, C:H.34, C:S.35, C:S.35, C:D.56, C:D.63, C:D.63, C:D.63, C:D.63, A:A.100, A:M.105, A:L.106, A:T.132, A:T.133 Salt bridges: C:H.10, C:H.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Steinbacher, S. et al., Structure of 2C-Methyl-D-Erythritol-2,4-Cyclodiphosphate Synthase Involved in Mevalonate Independent Biosynthesis of Isoprenoids. J.Mol.Biol. (2002)

Release Date

2004-08-31

Peptides

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

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