SMTL ID : 1ud9.5 (4 other biounits)

Crystal Structure of Proliferating Cell Nuclear Antigen (PCNA) Homolog From Sulfolobus tokodaii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

homo-trimer

Ligands

17 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: A.1 Ligands: ZN.2 No protein-ligand interaction detected (PLIP) ZN.2: 3 residues within 4Å: Chain A: D.90, D.92 Ligands: ZN.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.90, A:D.90, A:D.92, H2O.3 ZN.3: 2 residues within 4Å: Chain A: E.167, S.245 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.167, A:E.167, A:S.245, A:S.245, H2O.3 ZN.4: 1 residues within 4Å: Chain A: E.159 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.159, A:E.159, H2O.3 ZN.5: 1 residues within 4Å: Chain A: E.191 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.191, A:E.191, H2O.3 ZN.6: 3 residues within 4Å: Chain A: H.2, V.4, E.58 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.2, A:E.58, A:E.58, H2O.1 ZN.7: 1 residues within 4Å: Chain A: D.203 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.203, H2O.2 ZN.8: 3 residues within 4Å: Chain A: D.151, D.197, E.199 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.197, A:D.197 ZN.9: 5 residues within 4Å: Chain B: H.2, V.4, E.58 Chain C: A.1, D.92 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.2, B:E.58, B:E.58, H2O.13 ZN.10: 4 residues within 4Å: Chain B: D.90, D.92 Chain C: H.2, D.90 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Metal complexes: B:D.90, B:D.90, B:D.92, C:D.90, C:D.90 ZN.11: 1 residues within 4Å: Chain B: E.231 No protein-ligand interaction detected (PLIP) ZN.12: 3 residues within 4Å: Chain B: D.151, D.197, E.199 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.151, B:D.151, B:D.197, B:D.197, B:E.199 ZN.13: 3 residues within 4Å: Chain C: H.2, V.4, E.58 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.2, C:E.58, C:E.58, H2O.8, H2O.13 ZN.14: 2 residues within 4Å: Chain C: E.167, S.245 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.167, C:E.167, C:S.245, C:S.245, H2O.13 ZN.15: 1 residues within 4Å: Chain C: H.43 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.43 ZN.16: 1 residues within 4Å: Chain C: D.203 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.203 ZN.17: 1 residues within 4Å: Chain C: E.231 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanabe, E. et al., Crystal Structure of Proliferating Cell Nuclear Antigen (PCNA) Homolog From Sulfolobus tokodaii. To be published

Release Date

2004-06-15

Peptides

DNA polymerase sliding clamp A: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DNA polymerase sliding clamp A

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