SMTL ID : 1uhv.1

Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x DFX: 1,5-anhydro-2-deoxy-2-fluoro-D-xylitol(Post Translational Modification)

DFX.1: 12 residues within 4Å: Chain A: H.54, F.115, N.159, E.160, F.166, Y.230, E.277, Y.282, W.315, F.321, E.323, F.335 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.54, A:E.323 Water bridges: A:E.323 Halogen bonds: A:N.159 DFX.2: 12 residues within 4Å: Chain B: H.54, F.115, N.159, E.160, F.166, Y.230, E.277, Y.282, W.315, F.321, E.323, F.335 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.54, B:E.323 Halogen bonds: B:N.159 DFX.3: 12 residues within 4Å: Chain C: H.54, F.115, N.159, E.160, F.166, Y.230, E.277, Y.282, W.315, F.321, E.323, F.335 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:H.54, C:Y.230, C:E.323 Water bridges: C:E.323 Halogen bonds: C:N.159 DFX.4: 12 residues within 4Å: Chain D: H.54, F.115, N.159, E.160, F.166, Y.230, E.277, Y.282, W.315, F.321, E.323, F.335 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:H.54, D:E.323 Halogen bonds: D:N.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J.K. et al., Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase. J.Mol.Biol. (2004)

Release Date

2003-12-23

Peptides

Beta-xylosidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Beta-xylosidase

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