SMTL ID : 1ukw.1 (1 other biounit)

Crystal structure of medium-chain acyl-CoA dehydrogenase from Thermus thermophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 20 residues within 4Å: Chain A: F.122, L.124, S.125, N.129, G.130, S.131, W.155, I.156, S.157, K.200, T.208, L.357, I.360, Y.361, E.362, G.363, T.364, E.366, L.370 Chain B: Q.278 22 PLIP interactions: 21 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.155, A:K.200, A:T.208, A:L.357, A:L.357, A:Y.361 Hydrogen bonds: A:F.122, A:L.124, A:S.125, A:S.125, A:S.131, A:S.157, A:E.362, A:G.363, A:T.364, A:T.364, A:E.366, B:Q.278 Water bridges: A:G.130, A:D.132, A:W.155 pi-Stacking: A:Y.361 FAD.3: 20 residues within 4Å: Chain A: Q.278 Chain B: F.122, L.124, S.125, N.129, G.130, S.131, W.155, I.156, S.157, K.200, T.208, L.357, I.360, Y.361, E.362, G.363, T.364, E.366, L.370 21 PLIP interactions: 20 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:W.155, B:K.200, B:L.357, B:L.357, B:Y.361 Hydrogen bonds: B:F.122, B:L.124, B:S.125, B:S.125, B:S.131, B:S.157, B:E.362, B:G.363, B:T.364, B:T.364, B:E.366, A:Q.278 Water bridges: B:E.126, B:G.130, B:S.131 pi-Stacking: B:Y.361

1 x CO: COBALT (II) ION(Non-covalent)

CO.2: 2 residues within 4Å: Chain B: D.145, H.146 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.145, B:D.145, B:H.146, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hamada, K. et al., Crystal structure of Thermus thermophilus medium-chain acyl-CoA dehydrogenase. To be published

Release Date

2004-11-09

Peptides

acyl-CoA dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

acyl-CoA dehydrogenase

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