SMTL ID : 1uop.1

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, S554A MUTANT WITH BOUND PEPTIDE LIGAND GLY-PHE-GLU-PRO

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x GLY- PHE- GLU- PRO: PEPTIDE LIGAND GLY-PHE-GLU-PRO(Non-covalent)

GLY-PHE-GLU-PRO.1: 16 residues within 4Å: Chain A: F.173, M.235, G.254, C.255, Y.473, F.476, A.554, N.555, V.580, I.591, A.594, W.595, Y.599, R.643, V.644, H.680 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.173, A:F.476, A:A.554, A:V.580, A:I.591, A:A.594, A:W.595, A:W.595, A:V.644 Hydrogen bonds: A:Y.473, A:N.555, A:R.643 Water bridges: A:R.643, A:R.643 Salt bridges: A:H.680

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: D.446, N.522, N.525 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.522, A:N.525, A:N.525 Water bridges: A:R.505 GOL.3: 6 residues within 4Å: Chain A: A.226, E.227, F.228, W.262, I.276, K.281 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.227, A:E.227, A:K.281, A:K.281 GOL.4: 7 residues within 4Å: Chain A: W.150, V.151, T.152, E.169, R.170, V.171, S.197 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.151, A:V.151, A:R.170, A:V.171, A:S.197 Water bridges: A:R.170 GOL.5: 10 residues within 4Å: Chain A: P.568, D.569, F.571, G.572, D.627, I.628, Q.629, Y.630, P.631, N.668 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.571, A:G.572, A:D.627, A:Q.629, A:N.668 Water bridges: A:Q.629 GOL.6: 3 residues within 4Å: Chain A: E.239, D.291, Y.292 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.292 GOL.7: 4 residues within 4Å: Chain A: W.340, V.341, A.342, Y.385 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.291, A:V.341, A:Y.385

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szeltner, Z. et al., Electrostatic Environment at the Active Site of Prolyl Oligopeptidase is Highly Influential During Substrate Binding. J.Biol.Chem. (2003)

Release Date

2003-10-02

Peptides

PROLYL ENDOPEPTIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROLYL ENDOPEPTIDASE

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