SMTL ID : 1uum.1 (1 other biounit)

Rat dihydroorotate dehydrogenase (DHOD)in complex with atovaquone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 24 residues within 4Å: Chain A: A.71, A.72, G.73, K.76, S.96, N.121, Y.123, N.157, N.188, K.231, T.259, N.260, T.261, S.281, G.282, L.285, V.309, G.310, G.311, L.331, Y.332, T.333 Ligands: ORO.2, AFI.3 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:N.121, A:Y.123, A:Y.332 Hydrogen bonds: A:A.72, A:K.76, A:S.96, A:S.96, A:N.157, A:N.188, A:K.231, A:K.231, A:K.231, A:N.260, A:S.281, A:G.282, A:G.311, A:Y.332, A:T.333 Water bridges: A:A.72, A:G.310, A:V.312, A:A.334, A:A.334

1 x ORO: OROTIC ACID(Non-covalent)

ORO.2: 11 residues within 4Å: Chain A: K.76, N.121, R.122, Y.123, G.124, F.125, N.188, S.191, N.260, T.261 Ligands: FMN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.125 Hydrogen bonds: A:N.121, A:N.121, A:Y.123, A:G.124, A:F.125, A:N.260, A:N.260 Water bridges: A:N.121 Salt bridges: A:K.76

1 x AFI: 2-[4-(4-CHLOROPHENYL)CYCLOHEXYLIDENE]-3,4-DIHYDROXY-1(2H)-NAPHTHALENONE(Non-covalent)

AFI.3: 17 residues within 4Å: Chain A: E.16, M.19, P.20, Q.23, P.28, A.31, H.32, A.35, L.44, F.74, V.110, R.112, Y.332, L.335, I.336, P.340 Ligands: FMN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.20, A:Q.23, A:H.32, A:L.44, A:V.110, A:Y.332, A:I.336, A:P.340 Hydrogen bonds: A:Q.23, A:R.112

1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.4: 6 residues within 4Å: Chain A: L.22, D.27, S.30, R.33, R.37, R.107 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.22 Hydrogen bonds: A:S.30, A:S.30, A:R.37, A:R.37, A:R.37, A:R.107, A:R.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hansen, M. et al., Inhibitor Binding in a Class 2 Dihydroorotate Dehydrogenase Causes Variations in the Membrane-Associated N-Terminal Domain. Protein Sci. (2004)

Release Date

2004-04-01

Peptides

DIHYDROOROTATE DEHYDROGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DIHYDROOROTATE DEHYDROGENASE

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