- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 20 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)
CD.2: 1 residues within 4Å:- Chain A: D.200
Ligand excluded by PLIPCD.3: 3 residues within 4Å:- Chain A: E.195
- Chain B: E.281
- Ligands: CL.17
Ligand excluded by PLIPCD.4: 1 residues within 4Å:- Chain A: E.159
Ligand excluded by PLIPCD.5: 2 residues within 4Å:- Chain A: E.178
- Ligands: CL.7
Ligand excluded by PLIPCD.6: 2 residues within 4Å:- Chain A: D.148, H.175
Ligand excluded by PLIPCD.11: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCD.15: 2 residues within 4Å:- Chain B: D.148, H.175
Ligand excluded by PLIPCD.16: 1 residues within 4Å:- Chain B: E.178
Ligand excluded by PLIPCD.18: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCD.19: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCD.22: 1 residues within 4Å:- Chain C: D.200
Ligand excluded by PLIPCD.23: 3 residues within 4Å:- Chain C: E.195
- Chain D: E.281
- Ligands: CL.37
Ligand excluded by PLIPCD.24: 1 residues within 4Å:- Chain C: E.159
Ligand excluded by PLIPCD.25: 2 residues within 4Å:- Chain C: E.178
- Ligands: CL.27
Ligand excluded by PLIPCD.26: 2 residues within 4Å:- Chain C: D.148, H.175
Ligand excluded by PLIPCD.31: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCD.35: 2 residues within 4Å:- Chain D: D.148, H.175
Ligand excluded by PLIPCD.36: 1 residues within 4Å:- Chain D: E.178
Ligand excluded by PLIPCD.38: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCD.39: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIP- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 5 residues within 4Å:- Chain A: P.121, D.123, A.124, T.302
- Ligands: CD.5
Ligand excluded by PLIPCL.17: 4 residues within 4Å:- Chain A: E.195
- Chain B: L.280, E.281
- Ligands: CD.3
Ligand excluded by PLIPCL.27: 5 residues within 4Å:- Chain C: P.121, D.123, A.124, T.302
- Ligands: CD.25
Ligand excluded by PLIPCL.37: 4 residues within 4Å:- Chain C: E.195
- Chain D: L.280, E.281
- Ligands: CD.23
Ligand excluded by PLIP- 12 x NA: SODIUM ION(Non-functional Binders)
NA.8: 5 residues within 4Å:- Chain A: H.19, Y.227
- Chain C: H.19, Y.227
- Ligands: NA.28
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:H.19, C:H.19
NA.9: 5 residues within 4Å:- Chain A: F.12, Y.226
- Chain C: F.12, Y.226
- Ligands: NA.29
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain C- Water bridges: A:S.15, A:Y.227, C:T.16, C:Y.226, C:Y.227, C:Y.227
NA.10: 4 residues within 4Å:- Chain A: R.2, K.3, L.26, G.27
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.3, A:L.26
NA.12: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)NA.13: 3 residues within 4Å:- Chain B: Y.226
- Chain D: Y.226
- Ligands: NA.33
4 PLIP interactions:1 interactions with chain D, 3 interactions with chain B- Water bridges: D:Y.227, B:S.15, B:Y.227, B:Y.227
NA.20: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)NA.28: 5 residues within 4Å:- Chain A: H.19, Y.227
- Chain C: H.19, Y.227
- Ligands: NA.8
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:H.19
- Water bridges: C:T.16, C:Y.227
NA.29: 5 residues within 4Å:- Chain A: F.12, Y.226
- Chain C: F.12, Y.226
- Ligands: NA.9
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain C- Water bridges: A:S.15, A:T.16, A:Y.227, C:Y.226, C:Y.227
NA.30: 4 residues within 4Å:- Chain C: R.2, K.3, L.26, G.27
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:K.3
- Water bridges: C:E.25, C:L.26
NA.32: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)NA.33: 3 residues within 4Å:- Chain B: Y.226
- Chain D: Y.226
- Ligands: NA.13
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain D- Water bridges: B:S.15, B:Y.227, D:Y.226, D:Y.227, D:Y.227
NA.40: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bjork, A. et al., Large Improvement in the Thermal Stability of a Tetrameric Malate Dehydrogenase by Single Point Mutations at the Dimer-Dimer Interface. J.Mol.Biol. (2004)
- Release Date
- 2004-08-26
- Peptides
- MALATE DEHYDROGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
AD
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 20 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bjork, A. et al., Large Improvement in the Thermal Stability of a Tetrameric Malate Dehydrogenase by Single Point Mutations at the Dimer-Dimer Interface. J.Mol.Biol. (2004)
- Release Date
- 2004-08-26
- Peptides
- MALATE DEHYDROGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
AD
C