SMTL ID : 1v0y.1

Phospholipase D from Streptomyces sp. strain PMF soaked with the substrate dibutyrylphosphatidylcholine.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x HI5: 2-(BUTYRYLOXY)-1-{[(TETRAHYDROXYPHOSPHORANYL)OXY]METHYL}ETHYL BUTYRATE(Covalent)

HI5.1: 10 residues within 4Å: Chain A: L.87, W.165, H.167, K.169, N.184, H.440, K.442, N.457, Y.459, L.463 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.165 Hydrogen bonds: A:N.184, A:N.457 Water bridges: A:K.442, A:K.442 Salt bridges: A:H.167, A:K.169, A:H.440, A:K.442

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leiros, I. et al., The Reaction Mechanism of Phospholipase D from Streptomyces Sp. Strain Pmf. Snapshots Along the Reaction Pathway Reveal a Pentacoordinate Reaction Intermediate and an Unexpected Final Product. J.Mol.Biol. (2004)

Release Date

2004-06-03

Peptides

PHOSPHOLIPASE D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHOSPHOLIPASE D

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