SMTL ID : 1v1b.2 (1 other biounit)

2-KETO-3-DEOXYGLUCONATE KINASE FROM THERMUS THERMOPHILUS WITH BOUND ATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-hexamer

Ligands

6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 19 residues within 4Å: Chain A: N.165, R.167, S.193, K.219, G.221, G.224, A.238, F.239, V.241, P.246, G.248, A.249, G.250, D.251, F.253, N.275, G.278, A.279, A.282 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.165, A:R.167, A:S.193, A:R.220, A:V.241, A:G.248, A:A.249, A:G.250, A:D.251, A:D.251, A:D.251, A:N.275 Salt bridges: A:K.219 ATP.2: 18 residues within 4Å: Chain B: N.165, R.167, K.219, G.221, G.224, A.238, F.239, V.241, P.246, G.248, A.249, G.250, D.251, F.253, N.275, G.278, A.279, A.282 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:N.165, B:R.167, B:R.220, B:V.241, B:G.248, B:G.248, B:A.249, B:G.250, B:D.251, B:D.251, B:N.275 Water bridges: B:R.167 Salt bridges: B:K.219, B:K.219 ATP.3: 19 residues within 4Å: Chain C: N.165, R.167, S.193, K.219, G.221, G.224, A.238, F.239, V.241, P.246, G.248, A.249, G.250, D.251, F.253, N.275, G.278, A.279, A.282 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:N.165, C:R.167, C:S.193, C:R.220, C:V.241, C:G.248, C:A.249, C:G.250, C:D.251, C:D.251, C:D.251, C:N.275 Salt bridges: C:K.219 ATP.4: 18 residues within 4Å: Chain D: N.165, R.167, K.219, G.221, G.224, A.238, F.239, V.241, P.246, G.248, A.249, G.250, D.251, F.253, N.275, G.278, A.279, A.282 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:N.165, D:R.167, D:R.220, D:V.241, D:G.248, D:G.248, D:A.249, D:G.250, D:D.251, D:D.251, D:N.275 Water bridges: D:R.167 Salt bridges: D:K.219, D:K.219 ATP.5: 19 residues within 4Å: Chain E: N.165, R.167, S.193, K.219, G.221, G.224, A.238, F.239, V.241, P.246, G.248, A.249, G.250, D.251, F.253, N.275, G.278, A.279, A.282 13 PLIP interactions: 13 interactions with chain E Hydrogen bonds: E:N.165, E:R.167, E:S.193, E:R.220, E:V.241, E:G.248, E:A.249, E:G.250, E:D.251, E:D.251, E:D.251, E:N.275 Salt bridges: E:K.219 ATP.6: 18 residues within 4Å: Chain F: N.165, R.167, K.219, G.221, G.224, A.238, F.239, V.241, P.246, G.248, A.249, G.250, D.251, F.253, N.275, G.278, A.279, A.282 14 PLIP interactions: 14 interactions with chain F Hydrogen bonds: F:N.165, F:R.167, F:R.220, F:V.241, F:G.248, F:G.248, F:A.249, F:G.250, F:D.251, F:D.251, F:N.275 Water bridges: F:R.167 Salt bridges: F:K.219, F:K.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ohshima, N. et al., Structure of Thermus thermophilus 2-Keto-3-deoxygluconate kinase: evidence for recognition of an open chain substrate. J. Mol. Biol. (2004)

Release Date

2004-04-14

Peptides

2-KETO-3-DEOXYGLUCONATE KINASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

E
C

F
D

2-KETO-3-DEOXYGLUCONATE KINASE

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