SMTL ID : 1v8f.2 (1 other biounit)

Crystal Structure of Pantoate-beta-Alanine (Pantothenate Synthetase) from Thermus Thermophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: M.25, Q.56, R.117, H.120, R.183 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: G.58, P.59, G.60 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: T.24, M.25, H.32 Ligands: 144.4 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain B: M.25, Q.56, R.117, H.120, R.183 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain B: M.25, H.32 Ligands: GOL.14 Ligand excluded by PLIP CL.16: 5 residues within 4Å: Chain C: M.25, Q.56, R.117, H.120, R.183 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain C: G.58, P.59, G.60 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain C: T.24, M.25, H.32 Ligands: 144.19 Ligand excluded by PLIP CL.27: 5 residues within 4Å: Chain D: M.25, Q.56, R.117, H.120, R.183 Ligand excluded by PLIP CL.28: 3 residues within 4Å: Chain D: M.25, H.32 Ligands: GOL.29 Ligand excluded by PLIP

2 x 144: TRIS-HYDROXYMETHYL-METHYL-AMMONIUM(Non-covalent)

144.4: 8 residues within 4Å: Chain A: P.23, M.25, Q.56, V.124, V.127, V.128, Q.149 Ligands: CL.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.23, A:Q.56, A:Q.149, A:Q.149 144.19: 8 residues within 4Å: Chain C: P.23, M.25, Q.56, V.124, V.127, V.128, Q.149 Ligands: CL.18 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:P.23, C:Q.56, C:Q.149, C:Q.149

2 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.5: 5 residues within 4Å: Chain A: R.2, V.4, A.13, F.45, D.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.2 Water bridges: A:P.44 P6G.20: 5 residues within 4Å: Chain C: R.2, V.4, A.13, F.45, D.83 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.2, C:D.83 Water bridges: C:P.44

16 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: E.61, D.62, R.117, R.183, R.262, R.267 Ligand excluded by PLIP GOL.7: 2 residues within 4Å: Chain A: S.214 Chain D: S.214 Ligand excluded by PLIP GOL.8: 5 residues within 4Å: Chain A: T.109, G.114, P.118, G.119 Chain D: E.105 Ligand excluded by PLIP GOL.9: 2 residues within 4Å: Chain A: T.6, E.92 Ligand excluded by PLIP GOL.10: 6 residues within 4Å: Chain A: A.99, R.101 Chain B: E.105, G.106 Chain C: A.115, P.118 Ligand excluded by PLIP GOL.11: 10 residues within 4Å: Chain A: H.29, G.31, H.32, L.35, K.145, D.146, P.170, T.171, V.172, L.180 Ligand excluded by PLIP GOL.14: 8 residues within 4Å: Chain B: P.23, M.25, N.53, Q.56, V.124, V.127, Q.149 Ligands: CL.13 Ligand excluded by PLIP GOL.15: 4 residues within 4Å: Chain B: H.241, T.244, L.248, V.252 Ligand excluded by PLIP GOL.21: 6 residues within 4Å: Chain C: E.61, D.62, R.117, R.183, R.262, R.267 Ligand excluded by PLIP GOL.22: 2 residues within 4Å: Chain B: S.214 Chain C: S.214 Ligand excluded by PLIP GOL.23: 5 residues within 4Å: Chain B: E.105 Chain C: T.109, G.114, P.118, G.119 Ligand excluded by PLIP GOL.24: 2 residues within 4Å: Chain C: T.6, E.92 Ligand excluded by PLIP GOL.25: 6 residues within 4Å: Chain A: A.115, P.118 Chain C: A.99, R.101 Chain D: E.105, G.106 Ligand excluded by PLIP GOL.26: 10 residues within 4Å: Chain C: H.29, G.31, H.32, L.35, K.145, D.146, P.170, T.171, V.172, L.180 Ligand excluded by PLIP GOL.29: 8 residues within 4Å: Chain D: P.23, M.25, N.53, Q.56, V.124, V.127, Q.149 Ligands: CL.28 Ligand excluded by PLIP GOL.30: 4 residues within 4Å: Chain D: H.241, T.244, L.248, V.252 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagautdinov, B. et al., Crystal Structure Of Pantothenate Synthetase From Thermus Thermophilus HB8. To be Published

Release Date

2004-01-20

Peptides

Pantoate-beta-alanine ligase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Pantoate-beta-alanine ligase

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