SMTL ID : 1v9p.2 (1 other biounit)

Crystal Structure Of Nad+-Dependent DNA Ligase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.409, C.412, C.425, C.430 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.409, A:C.412, A:C.425, A:C.430

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 11 residues within 4Å: Chain A: S.84, L.85, N.87, E.116, H.117, K.118, V.119, E.174, Y.226, H.256, K.315 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:L.85, A:N.87, A:E.116, A:V.119 Water bridges: A:L.85 Salt bridges: A:K.118, A:K.315 pi-Stacking: A:Y.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J.Y. et al., Crystal structure of NAD(+)-dependent DNA ligase: modular architecture and functional implications. Embo J. (2000)

Release Date

2004-03-30

Peptides

DNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA ligase

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