SMTL ID : 1vc2.1

Crystal structure of Glyceraldehyde 3-Phosphate Dehydrogenase from Thermus thermophilus HB8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 23 residues within 4Å: Chain A: N.6, G.7, G.9, R.10, I.11, N.30, D.31, L.32, K.75, S.93, T.94, G.95, F.97, T.117, A.118, C.149, T.179, N.180, N.311, E.312, Y.315 Chain B: L.187, P.188 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.11, A:Y.315 Hydrogen bonds: A:R.10, A:I.11, A:K.75, A:G.95, A:N.180, A:N.311 Water bridges: A:N.180 NAD.2: 23 residues within 4Å: Chain A: L.187, P.188 Chain B: N.6, G.7, G.9, R.10, I.11, N.30, D.31, L.32, K.75, S.93, T.94, G.95, F.97, T.117, A.118, C.149, T.179, N.180, N.311, E.312, Y.315 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.11, B:Y.315 Hydrogen bonds: B:R.10, B:I.11, B:K.75, B:G.95, B:N.180, B:N.311 Water bridges: B:N.180 NAD.3: 23 residues within 4Å: Chain C: N.6, G.7, G.9, R.10, I.11, N.30, D.31, L.32, K.75, S.93, T.94, G.95, F.97, T.117, A.118, C.149, T.179, N.180, N.311, E.312, Y.315 Chain D: L.187, P.188 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:I.11, C:Y.315 Hydrogen bonds: C:R.10, C:I.11, C:K.75, C:G.95, C:T.117, C:N.180, C:N.311 Water bridges: C:N.180 NAD.4: 23 residues within 4Å: Chain C: L.187, P.188 Chain D: N.6, G.7, G.9, R.10, I.11, N.30, D.31, L.32, K.75, S.93, T.94, G.95, F.97, T.117, A.118, C.149, T.179, N.180, N.311, E.312, Y.315 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:I.11, D:Y.315 Hydrogen bonds: D:R.10, D:I.11, D:K.75, D:G.95, D:T.117, D:N.180, D:N.311 Water bridges: D:N.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishijima, J. et al., Crystal structure of the Glyceraldehyde 3-Phosphate Dehydrogenase from Thermus thermophilus HB8. To be Published

Release Date

2004-03-16

Peptides

Glyceraldehyde 3-Phosphate Dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Glyceraldehyde 3-Phosphate Dehydrogenase