SMTL ID : 1vh8.1 (2 other biounits)

Crystal structure of a 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-trimer

Ligands

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.1: 12 residues within 4Å: Chain A: G.141, F.142, R.145 Chain B: G.141, F.142, R.145 Chain C: G.141, F.142, R.145 Ligands: ACY.2, ACY.3, ACY.4 10 PLIP interactions: 3 interactions with chain C, 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: C:F.142, A:G.141, A:F.142, B:F.142 Water bridges: C:R.145, A:R.145, A:E.147 Salt bridges: C:R.145, A:R.145, B:R.145

3 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 9 residues within 4Å: Chain A: T.137, L.140, G.141, F.142, T.143 Chain C: F.142 Ligands: POP.1, ACY.3, ACY.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.142, A:T.143 ACY.3: 9 residues within 4Å: Chain A: F.142 Chain B: T.137, L.140, G.141, F.142, T.143 Ligands: POP.1, ACY.2, ACY.4 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:T.143 Hydrogen bonds: B:T.143 ACY.4: 9 residues within 4Å: Chain B: F.142 Chain C: T.137, L.140, G.141, F.142, T.143 Ligands: POP.1, ACY.2, ACY.3 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:T.137, C:T.143 Hydrogen bonds: C:F.142, C:T.143, C:G.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Badger, J. et al., Structural analysis of a set of proteins resulting from a bacterial genomics project. Proteins (2005)

Release Date

2003-12-30

Peptides

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

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