SMTL ID : 1vk5.2 (1 other biounit)

X-ray Structure of Gene Product from Arabidopsis Thaliana At3g22680

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: G.59, S.60, L.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.60 Water bridges: A:G.59 SO4.2: 4 residues within 4Å: Chain A: S.132, H.133 Chain B: T.100, D.101 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:H.133, B:T.100, B:D.101 Water bridges: A:D.47, A:H.133, A:L.134, B:T.100 Salt bridges: A:H.133 SO4.3: 3 residues within 4Å: Chain A: P.55, T.56, N.57 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.56, A:T.56, A:N.57, A:N.57 SO4.9: 3 residues within 4Å: Chain B: G.59, S.60, L.77 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.60 Water bridges: B:G.59 SO4.10: 4 residues within 4Å: Chain A: T.100, D.101 Chain B: S.132, H.133 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:H.133, A:D.101 Water bridges: B:H.133, B:H.133, B:L.134, A:T.100 Salt bridges: B:H.133 SO4.11: 3 residues within 4Å: Chain B: P.55, T.56, N.57 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.56, B:T.56, B:T.56, B:N.57, B:N.57

2 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)

CPS.4: 7 residues within 4Å: Chain A: R.41, M.44, Y.45, Y.48, I.150, I.153 Ligands: EDO.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.45, A:Y.48, A:I.150, A:I.150, A:I.153 CPS.12: 7 residues within 4Å: Chain B: R.41, M.44, Y.45, Y.48, I.150, I.153 Ligands: EDO.13 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.45, B:Y.48, B:I.150, B:I.150, B:I.153

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 9 residues within 4Å: Chain A: Y.45, Y.48, M.49, P.81, I.150, D.151, P.152, I.153 Ligands: CPS.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.151 Water bridges: A:Y.45, A:F.154 EDO.6: 6 residues within 4Å: Chain A: L.85, H.127, H.135 Chain B: L.89, R.92, W.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.135 Water bridges: A:L.85 EDO.7: 3 residues within 4Å: Chain A: I.72, S.73, Q.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.73, A:Q.76 EDO.8: 6 residues within 4Å: Chain A: K.75, N.87, S.148, F.149, I.150, D.151 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.150, A:D.151 EDO.13: 9 residues within 4Å: Chain B: Y.45, Y.48, M.49, P.81, I.150, D.151, P.152, I.153 Ligands: CPS.12 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.151 Water bridges: B:Y.45, B:F.154 EDO.14: 6 residues within 4Å: Chain A: L.89, R.92, W.93 Chain B: L.85, H.127, H.135 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.135 Water bridges: B:L.85 EDO.15: 3 residues within 4Å: Chain B: I.72, S.73, Q.76 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.73, B:Q.76 EDO.16: 6 residues within 4Å: Chain B: K.75, N.87, S.148, F.149, I.150, D.151 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Allard, S.T. et al., Structure at 1.6 A resolution of the protein from gene locus At3g22680 from Arabidopsis thaliana. Acta Crystallogr.,Sect.F (2005)

Release Date

2004-05-18

Peptides

expressed protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

expressed protein

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