SMTL ID : 1vlb.1

STRUCTURE REFINEMENT OF THE ALDEHYDE OXIDOREDUCTASE FROM DESULFOVIBRIO GIGAS AT 1.28 A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

monomer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: R.460, L.498, F.532, Y.535, G.536, Q.539 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: Y.892, R.893 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: Y.897, P.898, E.899 Ligand excluded by PLIP

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 2 residues within 4Å: Chain A: E.899, E.903 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.899, A:E.903, H2O.11 MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x PCD: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V)(Non-covalent)

PCD.6: 36 residues within 4Å: Chain A: Q.99, C.139, G.419, T.420, F.421, G.422, A.531, F.532, R.533, W.650, H.653, G.654, Q.655, G.656, G.660, S.695, G.696, G.697, S.698, R.699, Q.700, Q.701, L.795, S.797, L.798, C.799, N.800, T.804, Q.807, A.864, S.865, G.866, V.867, G.868, E.869 Ligands: IPA.9 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:Q.701, A:V.867 Hydrogen bonds: A:Q.99, A:T.420, A:F.421, A:F.532, A:H.653, A:H.653, A:Q.655, A:G.656, A:G.697, A:R.699, A:Q.700, A:Q.701, A:Q.701, A:S.797, A:C.799, A:N.800, A:Q.807, A:Q.807, A:V.867, A:G.868, A:E.869 Water bridges: A:R.533

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.7: 9 residues within 4Å: Chain A: G.97, Q.99, C.100, G.101, C.103, C.137, R.138, C.139, I.368 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.100, A:C.103, A:C.137, A:C.139 FES.8: 11 residues within 4Å: Chain A: V.38, G.39, C.40, E.41, G.43, Q.44, C.45, G.46, C.48, R.58, C.60 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.40, A:C.45, A:C.48, A:C.60

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.9: 8 residues within 4Å: Chain A: F.425, R.501, A.531, Y.535, L.626, G.696, G.697 Ligands: PCD.6 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.425, A:A.531, A:Y.535, A:Y.535, A:L.626 Hydrogen bonds: A:G.697 Water bridges: A:Y.622, A:Y.622 IPA.10: 2 residues within 4Å: Chain A: P.416, W.683 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.683

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rebelo, J.M. et al., Structure refinement of the aldehyde oxidoreductase from Desulfovibrio gigas (MOP) at 1.28 A. J.Biol.Inorg.Chem. (2001)

Release Date

2004-07-27

Peptides

ALDEHYDE OXIDOREDUCTASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ALDEHYDE OXIDOREDUCTASE

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