SMTL ID : 1vlh.1

Crystal structure of Phosphopantetheine adenylyltransferase (TM0741) from Thermotoga maritima at 2.20 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

6 x PNS: 4'-PHOSPHOPANTETHEINE(Non-covalent)

PNS.1: 16 residues within 4Å: Chain A: P.18, G.19, S.20, T.47, E.48, N.49, K.52, G.82, L.83, L.84, R.98, Y.108, M.112, N.116 Chain E: E.144, Y.148 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain E Hydrophobic interactions: A:P.18, A:L.84 Hydrogen bonds: A:S.20, A:E.48, A:N.49, A:L.84, A:Y.108, A:Y.108, E:E.144, E:E.144 Water bridges: A:F.21, A:V.85 Salt bridges: A:K.52, A:R.98 PNS.2: 17 residues within 4Å: Chain B: G.19, S.20, T.47, E.48, N.49, K.52, G.82, L.83, L.84, R.98, Y.108, M.112, A.115, N.116 Chain F: L.141, E.144, Y.148 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain F Hydrophobic interactions: B:T.47, B:N.49, F:Y.148 Hydrogen bonds: B:S.20, B:N.49, B:N.49, B:L.84, B:Y.108, F:E.144 Water bridges: B:F.21 Salt bridges: B:K.52, B:R.98 PNS.4: 18 residues within 4Å: Chain A: E.144, V.145, Y.148 Chain C: P.18, G.19, S.20, T.47, E.48, N.49, K.52, G.82, L.83, L.84, R.98, Y.108, M.112, A.115, N.116 15 PLIP interactions: 13 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:P.18, A:Y.148 Hydrogen bonds: C:S.20, C:T.47, C:E.48, C:N.49, C:L.84, C:Y.108, C:Y.108, A:E.144 Water bridges: C:F.21, C:V.85, C:N.116 Salt bridges: C:K.52, C:R.98 PNS.5: 18 residues within 4Å: Chain B: L.141, E.144, V.145, Y.148 Chain D: G.19, S.20, T.47, E.48, N.49, K.52, G.82, L.83, L.84, R.98, Y.108, M.112, A.115, N.116 12 PLIP interactions: 11 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: D:T.47, B:Y.148 Hydrogen bonds: D:S.20, D:E.48, D:N.49, D:N.49, D:L.84 Water bridges: D:V.85, D:N.116, D:N.116 Salt bridges: D:K.52, D:R.98 PNS.6: 18 residues within 4Å: Chain C: L.141, E.144, Y.148 Chain E: P.18, G.19, S.20, T.47, E.48, N.49, K.52, G.82, L.83, L.84, R.98, Y.108, M.112, A.115, N.116 13 PLIP interactions: 10 interactions with chain E, 3 interactions with chain C Hydrophobic interactions: E:N.49, C:Y.148 Hydrogen bonds: E:S.20, E:E.48, E:N.49, E:L.84, E:Y.108, C:E.144, C:E.144 Water bridges: E:F.21, E:V.85 Salt bridges: E:K.52, E:R.98 PNS.7: 18 residues within 4Å: Chain D: L.141, E.144, Y.148 Chain F: P.18, G.19, S.20, T.47, E.48, N.49, K.52, G.82, L.83, L.84, R.98, Y.108, M.112, A.115, N.116 11 PLIP interactions: 9 interactions with chain F, 2 interactions with chain D Hydrogen bonds: F:S.20, F:E.48, F:N.49, F:L.84, D:E.144 Water bridges: F:K.52, F:K.52, F:V.85 Salt bridges: F:K.52, F:R.98 Hydrophobic interactions: D:Y.148

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 5 residues within 4Å: Chain B: T.153, P.158, A.161, R.162, N.165 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:N.165 Hydrogen bonds: B:T.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Phosphopantetheine adenylyltransferase (TM0741) from Thermotoga maritima at 2.20 A resolution. To be published

Release Date

2004-08-17

Peptides

Phosphopantetheine adenylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Phosphopantetheine adenylyltransferase