SMTL ID : 1vlp.2 (3 other biounits)

Crystal structure of a putative nicotinate phosphoribosyltransferase (yor209c, npt1) from saccharomyces cerevisiae at 1.75 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: S.339, S.341, G.366, T.367 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.341, A:T.367, A:T.367, A:T.367 Water bridges: A:L.342, A:G.366, A:G.366

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: Y.48, N.50, F.57, K.128, L.129 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: Q.54, K.123 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.123 EDO.4: 7 residues within 4Å: Chain A: T.43, V.44, T.45, S.134, E.394, N.396, G.397 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.43, A:E.394, A:G.397

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chappie, J.S. et al., The structure of a eukaryotic nicotinic acid phosphoribosyltransferase reveals structural heterogeneity among type II PRTases. Structure (2005)

Release Date

2004-08-24

Peptides

nicotinate phosphoribosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

nicotinate phosphoribosyltransferase

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