SMTL ID : 1vrg.1

Crystal structure of propionyl-CoA carboxylase, beta subunit (TM0716) from THERMOTOGA MARITIMA at 2.30 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: H.391 Chain D: H.391 5 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: D:H.391, A:H.391, H2O.34, H2O.36, H2O.37 MG.3: 2 residues within 4Å: Chain B: H.391 Chain E: H.391 6 PLIP interactions: 1 interactions with chain B, 1 interactions with chain E, 4 Ligand-Water interactions Metal complexes: B:H.391, E:H.391, H2O.14, H2O.15, H2O.19, H2O.47 MG.6: 3 residues within 4Å: Chain C: D.352, H.391 Chain F: H.391 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain F, 4 Ligand-Water interactions Metal complexes: C:H.391, F:H.391, H2O.23, H2O.27, H2O.53, H2O.54

10 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.2: 4 residues within 4Å: Chain A: G.208, P.209, N.210, V.211 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.210, A:N.210, A:V.211 BCT.4: 4 residues within 4Å: Chain B: G.208, P.209, N.210, V.211 No protein-ligand interaction detected (PLIP) BCT.5: 4 residues within 4Å: Chain B: P.287, D.288, N.289, K.292 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.288 BCT.7: 4 residues within 4Å: Chain C: G.208, P.209, N.210, V.211 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.208, C:N.210, C:N.210 BCT.8: 3 residues within 4Å: Chain C: P.287, D.288, N.289 No protein-ligand interaction detected (PLIP) BCT.9: 4 residues within 4Å: Chain D: G.208, P.209, N.210, V.211 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.208, D:N.210 BCT.10: 4 residues within 4Å: Chain D: L.130, K.131, M.132, G.133 No protein-ligand interaction detected (PLIP) BCT.11: 4 residues within 4Å: Chain E: G.208, P.209, N.210, V.211 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:G.208, E:N.210 BCT.12: 4 residues within 4Å: Chain E: P.287, D.288, N.289, K.292 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:D.288, E:D.288 BCT.13: 4 residues within 4Å: Chain F: G.208, P.209, N.210, V.211 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of propionyl-CoA carboxylase, beta subunit (TM0716) from THERMOTOGA MARITIMA at 2.30 A resolution. To be published

Release Date

2005-03-08

Peptides

propionyl-CoA carboxylase, beta subunit: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

propionyl-CoA carboxylase, beta subunit