SMTL ID : 1vrl.1

MutY adenine glycosylase in complex with DNA and soaked adenine free base

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain C: S.121, V.126 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:S.121, C:S.121, C:V.126, H2O.2, H2O.2

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.2: 9 residues within 4Å: Chain C: R.156, L.157, V.200, C.201, C.208, C.211, Q.214, C.217, A.225 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.201, C:C.208, C:C.211, C:C.217

1 x ADE: ADENINE(Non-covalent)

ADE.3: 12 residues within 4Å: Chain C: R.29, L.31, W.33, R.34, E.46, L.49, V.54, Y.129, L.137, E.191, I.194, E.195 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.29, C:R.34, C:E.46, C:E.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fromme, J.C. et al., Structural basis for removal of adenine mispaired with 8-oxoguanine by MutY adenine DNA glycosylase. Nature (2004)

Release Date

2005-03-22

Peptides

MutY: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

MutY

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