SMTL ID : 1w07.1

Arabidopsis thaliana acyl-CoA oxidase 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 32 residues within 4Å: Chain A: L.101, Y.135, Q.137, T.138, G.143, S.144, W.175, P.176, G.177, Y.234, N.239, P.419, T.422, Y.423, E.424, D.426, V.428, V.429, L.432 Chain B: R.310, Q.312, F.313, V.324, Y.327, T.329, Q.330, R.333, K.397, L.398, G.400, G.401, Y.404 40 PLIP interactions: 24 interactions with chain A, 16 interactions with chain B Hydrophobic interactions: A:W.175, A:W.175, A:Y.234, A:P.419, A:T.422, B:Y.404 Hydrogen bonds: A:Y.135, A:Q.137, A:T.138, A:T.138, A:G.143, A:S.144, A:G.177, A:E.424, A:D.426, B:T.329, B:Q.330, B:R.333, B:R.333, B:L.398, B:G.401 Water bridges: A:Y.135, A:Q.137, A:T.138, A:T.138, A:G.143, A:G.143, A:N.239, A:T.422, A:T.422, A:Q.513, B:R.310, B:R.310, B:Y.327, B:H.402, B:H.402, B:H.402 Salt bridges: B:R.310, B:R.310 pi-Stacking: B:Y.327 FAD.7: 31 residues within 4Å: Chain A: R.310, Q.312, F.313, V.324, Y.327, T.329, Q.330, R.333, K.397, L.398, G.400, G.401, Y.404 Chain B: L.101, Y.135, Q.137, T.138, G.143, S.144, W.175, P.176, G.177, N.239, P.419, T.422, Y.423, E.424, D.426, V.428, V.429, L.432 40 PLIP interactions: 17 interactions with chain A, 23 interactions with chain B Hydrophobic interactions: A:Y.404, B:W.175, B:W.175, B:P.419, B:T.422 Hydrogen bonds: A:Q.330, A:R.333, A:R.333, A:L.398, A:G.401, B:Y.135, B:Q.137, B:T.138, B:T.138, B:G.143, B:S.144, B:G.177, B:N.239, B:E.424, B:D.426 Water bridges: A:R.310, A:Y.327, A:Y.327, A:T.329, A:H.402, A:H.402, A:H.402, A:H.402, B:Y.135, B:Q.137, B:Q.137, B:Q.137, B:Q.137, B:T.138, B:H.142, B:T.422, B:D.426 Salt bridges: A:R.310, A:R.310 pi-Stacking: A:Y.327

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: H.6, D.9 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.6, A:D.9, H2O.1, H2O.1, H2O.1

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: G.230, N.231, P.411 Chain B: M.229, G.230 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain A: M.229, G.230 Chain B: G.230, N.231, W.406, P.411 Ligand excluded by PLIP

6 x PT: PLATINUM (II) ION(Non-covalent)

PT.4: 1 residues within 4Å: Chain A: M.256 No protein-ligand interaction detected (PLIP) PT.5: 3 residues within 4Å: Chain A: E.2, H.6, N.624 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.2, A:H.6, H2O.1, H2O.1 PT.6: 3 residues within 4Å: Chain A: M.281, R.285, H.374 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.374 PT.9: 1 residues within 4Å: Chain B: M.256 No protein-ligand interaction detected (PLIP) PT.10: 1 residues within 4Å: Chain B: H.6 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.6 PT.11: 3 residues within 4Å: Chain B: M.281, R.285, H.374 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.374

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pedersen, L. et al., Acyl-Coa Oxidase 1 from Arabidopsis Thaliana. Structure of a Key Enzyme in Plant Lipid Metabolism. J.Mol.Biol. (2005)

Release Date

2004-12-15

Peptides

ACYL-COA OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ACYL-COA OXIDASE