SMTL ID : 1w1h.2 (3 other biounits)

CRYSTAL STRUCTURE OF THE PDK1 PLECKSTRIN HOMOLOGY (PH) DOMAIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: K.60, K.62, Y.81, R.116 Ligands: SO4.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.60, A:K.62, A:Y.81, A:R.116, A:R.116 Water bridges: A:Y.81 GOL.2: 6 residues within 4Å: Chain A: I.11, D.13, F.19, K.36, N.41, M.55 4 PLIP interactions: 4 interactions with chain A Water bridges: A:D.13, A:S.16, A:S.16, A:G.40

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: P.2, L.3, G.4, S.5, N.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.4, A:S.5, A:N.6, A:N.6 SO4.4: 6 residues within 4Å: Chain A: K.60, K.62, R.69, Y.81, K.90 Ligands: GOL.1 10 PLIP interactions: 10 interactions with chain A Water bridges: A:K.62, A:R.67, A:R.67, A:R.69, A:K.90, A:K.90 Salt bridges: A:K.60, A:K.62, A:R.69, A:K.90 SO4.5: 4 residues within 4Å: Chain A: R.141, Y.142, P.146, D.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.147 Salt bridges: A:R.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Komander, D. et al., Structural Insights Into the Regulation of Pdk1 by Phosphoinositides and Inositol Phosphates. Embo J. (2004)

Release Date

2004-11-19

Peptides

3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE-1

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