SMTL ID : 1w1l.1

STRUCTURE OF THE OCTAMERIC FLAVOENZYME VANILLYL-ALCOHOL OXIDASE: Phe454Tyr Mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 31 residues within 4Å: Chain A: P.99, I.100, S.101, I.102, G.103, R.104, N.105, S.106, P.169, D.170, L.171, G.174, S.175, G.178, N.179, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, E.410, W.413, I.414, H.422, F.424, Y.503, R.504, K.545 Ligands: EUG.2 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.171, A:W.413 Hydrogen bonds: A:S.101, A:I.102, A:G.103, A:R.104, A:N.105, A:D.170, A:S.175, A:N.179, A:N.179, A:V.185, A:V.185, A:V.262, A:V.262, A:Y.503, A:R.504, A:R.504, A:K.545 pi-Stacking: A:F.424 FAD.3: 31 residues within 4Å: Chain B: W.98, P.99, I.100, S.101, I.102, G.103, R.104, N.105, P.169, D.170, L.171, G.174, S.175, G.178, N.179, V.181, E.182, G.184, V.185, Y.187, G.260, I.261, V.262, E.410, W.413, I.414, H.422, F.424, R.504, K.545 Ligands: EUG.4 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:L.171, B:L.171, B:W.413, B:I.414 Hydrogen bonds: B:S.101, B:S.101, B:I.102, B:G.103, B:R.104, B:N.105, B:N.105, B:D.170, B:S.175, B:N.179, B:N.179, B:V.185, B:V.185, B:Y.187, B:V.262, B:R.504, B:R.504, B:K.545 pi-Stacking: B:F.424

2 x EUG: 2-methoxy-4-[(1E)-prop-1-en-1-yl]phenol(Non-covalent)

EUG.2: 10 residues within 4Å: Chain A: Y.108, D.170, V.185, Y.187, F.424, H.466, I.468, Y.503, R.504 Ligands: FAD.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.468, A:I.468 Hydrogen bonds: A:Y.503, A:R.504 pi-Stacking: A:F.424 EUG.4: 10 residues within 4Å: Chain B: Y.108, D.170, V.185, Y.187, F.424, T.459, I.468, Y.503, R.504 Ligands: FAD.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.424, B:I.468, B:I.468 Hydrogen bonds: B:Y.108, B:Y.503, B:Y.503, B:R.504 pi-Stacking: B:F.424

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Van Den Heuvel, R.H. et al., Laboratory-Evolved Vanillyl-Alcohol Oxidase Produces Natural Vanillin. J.Biol.Chem. (2004)

Release Date

2004-07-02

Peptides

VANILLYL-ALCOHOL OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

VANILLYL-ALCOHOL OXIDASE