SMTL ID : 1w4n.1

AGAO covalent complex with Tranylcypromine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.429, H.431, H.590 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.429, A:H.431, A:H.590, H2O.13, H2O.13 CU.8: 3 residues within 4Å: Chain B: H.429, H.431, H.590 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.429, B:H.431, B:H.590, H2O.32, H2O.33

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: R.47, D.438, M.439, F.444, D.579, I.580 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.580, A:I.580 NA.9: 6 residues within 4Å: Chain B: R.47, D.438, M.439, F.444, D.579, I.580 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.438, B:D.579, B:I.580

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 9 residues within 4Å: Chain A: G.348, I.349, R.365 Chain B: D.314, C.315, L.316, H.343, E.345, Y.385 11 PLIP interactions: 9 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:L.316 Water bridges: B:H.343, B:H.343, B:H.343, B:H.343, B:Y.385, B:Y.385, B:Y.385, A:I.349 Salt bridges: B:H.343, A:R.365 SO4.10: 9 residues within 4Å: Chain A: D.314, C.315, L.316, H.343, E.345, Y.385 Chain B: G.348, I.349, R.365 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:I.349, A:L.316 Water bridges: B:R.365, B:R.365, A:H.343 Salt bridges: B:R.365, A:H.343

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: L.125, V.157, D.159, H.168, V.195, P.196, A.197 No protein-ligand interaction detected (PLIP) GOL.5: 7 residues within 4Å: Chain A: Q.517, L.588, D.603, T.604 Chain B: H.513, K.608, R.610 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.603, A:D.603, A:T.604, A:T.604, B:K.608 Water bridges: A:Q.517, A:D.603, A:T.604 GOL.6: 10 residues within 4Å: Chain A: K.240, R.617, S.618, P.619, V.620, L.621, D.622 Chain B: L.207, T.208, R.212 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.618, A:S.618, A:L.621, A:D.622 Water bridges: A:R.617 GOL.7: 6 residues within 4Å: Chain A: D.442, G.443, F.444, T.445, N.497, E.499 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.442, A:D.442, A:F.444, A:T.445, A:N.497 GOL.11: 6 residues within 4Å: Chain B: V.157, D.159, H.168, V.195, P.196, A.197 No protein-ligand interaction detected (PLIP) GOL.12: 7 residues within 4Å: Chain A: H.513, K.608, R.610 Chain B: Q.517, L.588, D.603, T.604 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.603, B:D.603, B:T.604 Water bridges: B:Q.517, B:D.603, B:T.604, A:K.608 GOL.13: 10 residues within 4Å: Chain A: L.207, T.208, R.212 Chain B: K.240, R.617, S.618, P.619, V.620, L.621, D.622 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:T.208, A:T.208, B:L.621, B:D.622 GOL.14: 15 residues within 4Å: Chain B: R.530, R.531, A.533, P.551, T.552, G.553, F.555, V.556, H.559, S.560, G.561, G.562, A.563, G.564, P.566 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.531, B:T.552, B:S.560, B:A.563 Water bridges: B:A.533, B:F.555 GOL.15: 6 residues within 4Å: Chain B: D.442, G.443, F.444, T.445, N.497, E.499 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.442, B:D.442, B:F.444, B:T.445, B:N.497

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Langley, D.B. et al., Complexes of the Copper-Containing Amine Oxidase from Arthrobacter Globiformis with the Inhibitors Benzylhydrazine and Tranylcypromine. Acta Crystallogr.,Sect.F (2008)

Release Date

2005-12-08

Peptides

PHENYLETHYLAMINE OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PHENYLETHYLAMINE OXIDASE

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