SMTL ID : 1wdy.1

Crystal structure of ribonuclease

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 25A: 5'-O-MONOPHOSPHORYLADENYLYL(2'->5')ADENYLYL(2'->5')ADENOSINE(Non-covalent)

25A.1: 15 residues within 4Å: Chain A: E.35, G.38, W.40, N.45, Q.48, K.69, N.71, I.81, D.102, Y.104, F.106, E.111, V.114, Y.115, R.135 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:Q.14, A:Q.48, A:Q.48, A:N.71, A:E.111, A:Y.115 Water bridges: A:N.45, A:K.69, A:K.69, A:K.69, A:E.111, A:R.135, A:R.135, A:R.135, A:G.147, A:G.147, A:E.157 Salt bridges: A:K.69, A:R.135 pi-Stacking: A:W.40, A:W.40, A:W.40, A:F.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, N. et al., Structural basis for recognition of 2',5'-linked oligoadenylates by human ribonuclease L. Embo J. (2004)

Release Date

2004-10-05

Peptides

2-5A-dependent ribonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2-5A-dependent ribonuclease