SMTL ID : 1wht.1 (1 other biounit)

STRUCTURE OF THE COMPLEX OF L-BENZYLSUCCINATE WITH WHEAT SERINE CARBOXYPEPTIDASE II AT 2.0 ANGSTROMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- FUC- NDG: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-NDG.1: 5 residues within 4Å: Chain A: T.26, G.32, Y.110, N.112 Chain B: T.28 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:Y.110 Hydrophobic interactions: B:T.28, B:T.28 Hydrogen bonds: A:Y.110 NAG-FUC-NDG.5: 5 residues within 4Å: Chain C: T.26, G.32, Y.110, N.112 Chain D: T.28 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: D:T.28, D:T.28 Hydrogen bonds: C:Y.110, C:Y.110 Water bridges: D:T.28

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 8 residues within 4Å: Chain B: N.15, Q.20, N.26, G.29, M.31, Y.33, T.34, W.35 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.15 NAG-NAG.6: 8 residues within 4Å: Chain D: N.15, Q.20, N.26, G.29, M.31, Y.33, T.34, W.35 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.15, D:T.34

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: N.123, H.127 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.123 NAG.7: 2 residues within 4Å: Chain C: N.123, H.127 1 PLIP interactions: 1 interactions with chain C Water bridges: C:N.123

2 x BZS: L-BENZYLSUCCINIC ACID(Non-covalent)

BZS.4: 11 residues within 4Å: Chain A: N.56, G.57, G.58, C.61, Y.66, E.153, S.154, Y.155, Y.247 Chain B: H.127, E.128 13 PLIP interactions: 10 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Y.66, B:E.128 Hydrogen bonds: A:N.56, A:G.57, A:G.58, A:E.153, A:S.154, A:S.154, A:Y.155 pi-Stacking: A:Y.66, A:Y.247 Salt bridges: B:H.127, B:H.127 BZS.8: 11 residues within 4Å: Chain C: N.56, G.57, G.58, C.61, Y.66, E.153, S.154, Y.155, Y.247 Chain D: H.127, E.128 12 PLIP interactions: 9 interactions with chain C, 3 interactions with chain D Hydrophobic interactions: C:Y.66, D:E.128 Hydrogen bonds: C:N.56, C:G.57, C:G.58, C:S.154, C:S.154, C:Y.155 pi-Stacking: C:Y.66, C:Y.247 Salt bridges: D:H.127, D:H.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bullock, T.L. et al., Structure of the complex of L-benzylsuccinate with wheat serine carboxypeptidase II at 2.0-A resolution. Biochemistry (1994)

Release Date

1994-06-22

Peptides

SERINE CARBOXYPEPTIDASE II: AC
SERINE CARBOXYPEPTIDASE II: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

SERINE CARBOXYPEPTIDASE II

SERINE CARBOXYPEPTIDASE II

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