SMTL ID : 1wk8.2 (1 other biounit)

Isoleucyl-tRNA synthetase editing domain complexed with the pre-transfer editing substrate analogue, Val-AMS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x VMS: 5'O-[N-(L-VALYL)SULPHAMOYL]ADENOSINE(Non-covalent)

VMS.1: 15 residues within 4Å: Chain A: W.33, T.34, T.35, T.36, T.39, Y.114, V.115, S.116, D.119, V.124, H.125, A.127, F.130, G.131, D.134 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.130 Hydrogen bonds: A:T.34, A:T.35, A:T.35, A:T.35, A:T.36, A:T.36, A:T.36, A:T.36, A:Y.114, A:S.116, A:H.125 Water bridges: A:Q.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fukunaga, R. et al., Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase. J.Mol.Biol. (2006)

Release Date

2005-09-27

Peptides

Isoleucyl-tRNA synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Isoleucyl-tRNA synthetase

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