SMTL ID : 1wop.1

Crystal Structure of T-protein of the Glycine Cleavage System

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x FFO: N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid(Non-covalent)

FFO.1: 18 residues within 4Å: Chain A: M.51, Y.83, D.96, L.97, V.98, Y.100, V.110, V.111, N.112, Y.168, Y.169, G.187, Y.188, E.195, R.227, Y.236, W.256, R.362 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:Y.168, A:Y.169, A:Y.188, A:Y.188, A:Y.236, A:W.256 Hydrogen bonds: A:V.98, A:Y.100, A:V.110, A:Y.168, A:R.227 Water bridges: A:Y.83, A:D.96, A:N.112, A:G.187, A:E.195, A:E.195, A:R.357, A:R.357 Salt bridges: A:E.195, A:R.362 pi-Stacking: A:Y.83 FFO.2: 12 residues within 4Å: Chain A: L.55, E.106, L.108, I.137, E.160, K.173, S.174, I.175, E.180, T.181, L.182, M.197 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.137, A:K.173, A:K.173, A:K.173, A:E.180 Hydrogen bonds: A:E.106, A:E.160, A:K.173, A:E.180 Water bridges: A:E.160, A:L.182, A:L.182 Salt bridges: A:E.160, A:K.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, H.H. et al., Crystal Structure of T-protein of the Glycine Cleavage System: Cofactor binding, insights into H-protein recognition, and molecular basis for understanding nonketotic hyperglycinemia. J.Biol.Chem. (2004)

Release Date

2004-09-07

Peptides

Aminomethyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aminomethyltransferase

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