SMTL ID : 1wpb.3 (7 other biounits)

Structure of Escherichia coli yfbU gene product

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: Q.22 Chain B: Q.22 Chain C: Q.22 Chain D: Q.22 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: Q.15 Chain B: Q.15 Chain C: Q.15 Chain D: Q.15 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: H.78 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: H.81, V.82, S.85 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: S.162, N.164, E.165, Q.168 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: H.81, V.82 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain C: H.78 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain D: H.81, V.82 Ligands: CL.18 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain D: H.78 Ligands: CL.17 Ligand excluded by PLIP CL.19: 5 residues within 4Å: Chain D: E.61, L.62, K.63, T.66, R.110 Ligand excluded by PLIP

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 3 residues within 4Å: Chain A: R.68 Chain C: E.54, R.57 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.68, A:R.68 GOL.7: 3 residues within 4Å: Chain A: D.72, H.153, Q.158 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.158 Water bridges: A:H.153, A:Q.158 GOL.9: 2 residues within 4Å: Chain B: H.153, Q.158 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.153 GOL.10: 3 residues within 4Å: Chain B: H.78, R.124, Y.125 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.78, B:Y.125 Water bridges: B:T.126 GOL.12: 4 residues within 4Å: Chain A: E.122 Chain C: R.39, Q.51, E.54 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:R.39, C:Q.51, A:E.122 Water bridges: C:E.54 GOL.13: 2 residues within 4Å: Chain C: H.153, Q.158 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.153, C:Q.158 GOL.14: 1 residues within 4Å: Chain C: R.68 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.68, C:R.68 GOL.15: 4 residues within 4Å: Chain C: G.123, R.124, Y.125, T.126 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.125, C:T.126, C:T.126 GOL.16: 3 residues within 4Å: Chain C: T.69, D.72, L.149 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.72, C:H.153 Water bridges: C:R.68, C:D.72 GOL.20: 2 residues within 4Å: Chain D: R.124, Y.125 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.124, D:Y.125 Water bridges: D:G.123, D:T.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borek, D. et al., Crystal structure of Escherichia coli yfbU gene product. To be Published

Release Date

2004-12-07

Peptides

hypothetical protein yfbU: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
G

C
B

D
F

hypothetical protein yfbU

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