SMTL ID : 1wpb.4 (7 other biounits)

Structure of Escherichia coli yfbU gene product

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: Q.15 Chain B: Q.15 Chain C: Q.15 Chain D: Q.15 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: H.81, V.82, S.85 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain B: H.78 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain B: R.116 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain A: Q.22 Chain B: Q.22 Chain C: Q.22 Chain D: Q.22 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain C: H.78, F.128 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain C: H.81, V.82, S.85 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain D: H.81, V.82, S.85 Ligand excluded by PLIP

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: H.153, Q.158 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.158, A:Q.158 GOL.4: 4 residues within 4Å: Chain A: R.68 Chain C: L.50, R.53, E.54 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:R.68, A:R.68, C:E.54 GOL.5: 6 residues within 4Å: Chain A: R.39, L.50, Q.51, E.54 Chain D: M.118, E.122 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:R.39, A:Q.51, D:E.122 Water bridges: A:E.54, A:E.54 GOL.6: 4 residues within 4Å: Chain A: R.124, Y.125, T.126, H.127 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.125, A:H.127 GOL.9: 3 residues within 4Å: Chain B: D.72, H.153, Q.158 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.72, B:H.153, B:Q.158 Water bridges: B:D.72 GOL.10: 2 residues within 4Å: Chain B: D.72, H.153 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.68 GOL.14: 4 residues within 4Å: Chain C: R.124, Y.125, T.126, H.127 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.125, C:H.127 GOL.15: 2 residues within 4Å: Chain C: H.78, Y.159 1 PLIP interactions: 1 interactions with chain C Water bridges: C:Y.159 GOL.17: 6 residues within 4Å: Chain B: M.118, E.122 Chain D: R.39, L.50, Q.51, E.54 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:R.39, D:Q.51, D:E.54, B:E.122 Water bridges: D:E.54, D:E.54 GOL.18: 3 residues within 4Å: Chain D: D.72, H.153, Q.158 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:H.153, D:Q.158, D:Q.158 GOL.19: 4 residues within 4Å: Chain D: T.69, D.72, L.149, H.153 1 PLIP interactions: 1 interactions with chain D Water bridges: D:T.69 GOL.20: 3 residues within 4Å: Chain A: R.53, E.54 Chain D: R.68 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:R.68, D:R.68 Water bridges: A:E.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borek, D. et al., Crystal structure of Escherichia coli yfbU gene product. To be Published

Release Date

2004-12-07

Peptides

hypothetical protein yfbU: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
O

C
J

D
N

hypothetical protein yfbU

Related Entries With Identical Sequence