SMTL ID : 1wpb.5 (7 other biounits)

Structure of Escherichia coli yfbU gene product

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

9 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: Q.22 Chain B: Q.22 Chain C: Q.22 Chain D: Q.22 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: Q.15 Chain B: Q.15 Chain C: Q.15 Chain D: Q.15 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: H.78 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: H.81, V.82 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: H.78 Ligands: CL.8 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: H.81, V.82 Ligands: CL.7 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain C: H.78 Ligands: CL.13 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain C: H.81, V.82, S.85 Ligands: CL.12 Ligand excluded by PLIP CL.16: 1 residues within 4Å: Chain D: H.78 Ligand excluded by PLIP

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: H.78, R.124, Y.125 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.78, A:Y.125 Water bridges: A:T.126 GOL.6: 3 residues within 4Å: Chain A: T.69, D.72, H.153 No protein-ligand interaction detected (PLIP) GOL.9: 7 residues within 4Å: Chain B: R.39, L.50, Q.51, E.54 Chain D: M.118, E.122, R.124 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:R.39, B:E.54, D:E.122, D:R.124 GOL.10: 3 residues within 4Å: Chain B: E.75, H.78, Y.159 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.75 GOL.11: 4 residues within 4Å: Chain B: G.123, R.124, Y.125, T.126 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.124, B:Y.125, B:T.126, B:T.126 Water bridges: B:Y.125 GOL.14: 3 residues within 4Å: Chain C: H.78, R.124, Y.125 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:H.78, C:Y.125 Water bridges: C:T.126 GOL.15: 2 residues within 4Å: Chain A: R.57 Chain C: R.68 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.68, C:R.68 GOL.17: 3 residues within 4Å: Chain D: D.72, H.153, Q.158 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:D.72, D:H.153, D:Q.158 GOL.18: 2 residues within 4Å: Chain D: R.124, Y.125 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.124, D:Y.125 Water bridges: D:T.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borek, D. et al., Crystal structure of Escherichia coli yfbU gene product. To be Published

Release Date

2004-12-07

Peptides

hypothetical protein yfbU: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
M

C
L

D
P

hypothetical protein yfbU

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