- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x U- U- U- A- G- U- U: 5'-R(*UP*UP*UP*AP*GP*UP*U)-3'(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: H.137
- Chain E: H.72, H.76
- Ligands: HIS.4
5 PLIP interactions:2 interactions with chain E, 1 Ligand-Ligand interactions, 1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: E:H.72, E:H.76, HIS.4, A:H.137, H2O.28
MG.5: 4 residues within 4Å:- Chain B: H.137
- Chain D: H.72, H.76
- Ligands: HIS.6
5 PLIP interactions:1 Ligand-Ligand interactions, 2 interactions with chain D, 1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: HIS.6, D:H.72, D:H.76, B:H.137, H2O.4
MG.9: 4 residues within 4Å:- Chain A: H.72, H.76
- Chain C: H.137
- Ligands: HIS.10
5 PLIP interactions:2 interactions with chain A, 1 Ligand-Ligand interactions, 1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: A:H.72, A:H.76, HIS.10, C:H.137, H2O.4
MG.11: 4 residues within 4Å:- Chain D: H.137
- Chain F: H.72, H.76
- Ligands: HIS.12
5 PLIP interactions:1 interactions with chain D, 2 interactions with chain F, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: D:H.137, F:H.72, F:H.76, HIS.12, H2O.16
MG.15: 4 residues within 4Å:- Chain C: H.72, H.76
- Chain E: H.137
- Ligands: HIS.16
5 PLIP interactions:1 Ligand-Ligand interactions, 2 interactions with chain C, 1 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: HIS.16, C:H.72, C:H.76, E:H.137, H2O.16
MG.17: 4 residues within 4Å:- Chain B: H.72, H.76
- Chain F: H.137
- Ligands: HIS.18
5 PLIP interactions:2 interactions with chain B, 1 Ligand-Ligand interactions, 1 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: B:H.72, B:H.76, HIS.18, F:H.137, H2O.28
- 6 x HIS: HISTIDINE(Non-covalent)
HIS.4: 11 residues within 4Å:- Chain A: R.87, R.97, I.128, G.129, A.130, H.137
- Chain E: Y.68, H.72, Y.75, H.76
- Ligands: MG.3
8 PLIP interactions:4 interactions with chain A, 3 interactions with chain E, 1 Ligand-Ligand interactions- Hydrogen bonds: A:A.130, E:H.76, H.4
- Salt bridges: A:R.87, A:R.97, A:H.137, E:H.76
- Hydrophobic interactions: E:Y.75
HIS.6: 12 residues within 4Å:- Chain B: R.87, L.96, R.97, I.128, G.129, A.130, H.137
- Chain D: Y.68, H.72, Y.75, H.76
- Ligands: MG.5
9 PLIP interactions:4 interactions with chain B, 4 interactions with chain D, 1 Ligand-Ligand interactions- Hydrogen bonds: B:A.130, D:Y.68, D:H.72, H.6
- Salt bridges: B:R.87, B:R.97, B:H.137, D:H.76
- pi-Stacking: D:Y.75
HIS.10: 11 residues within 4Å:- Chain A: Y.68, H.72, Y.75, H.76
- Chain C: R.87, R.97, I.128, G.129, A.130, H.137
- Ligands: MG.9
8 PLIP interactions:4 interactions with chain C, 1 Ligand-Ligand interactions, 3 interactions with chain A- Hydrogen bonds: C:A.130, H.10, A:H.76
- Salt bridges: C:R.87, C:R.97, C:H.137, A:H.76
- Hydrophobic interactions: A:Y.75
HIS.12: 12 residues within 4Å:- Chain D: R.87, L.96, R.97, I.128, G.129, A.130, H.137
- Chain F: Y.68, H.72, Y.75, H.76
- Ligands: MG.11
9 PLIP interactions:4 interactions with chain D, 4 interactions with chain F, 1 Ligand-Ligand interactions- Hydrogen bonds: D:A.130, F:Y.68, F:H.72, H.12
- Salt bridges: D:R.87, D:R.97, D:H.137, F:H.76
- pi-Stacking: F:Y.75
HIS.16: 11 residues within 4Å:- Chain C: Y.68, H.72, Y.75, H.76
- Chain E: R.87, R.97, I.128, G.129, A.130, H.137
- Ligands: MG.15
8 PLIP interactions:4 interactions with chain E, 3 interactions with chain C, 1 Ligand-Ligand interactions- Hydrogen bonds: E:A.130, C:H.76, H.16
- Salt bridges: E:R.87, E:R.97, E:H.137, C:H.76
- Hydrophobic interactions: C:Y.75
HIS.18: 12 residues within 4Å:- Chain B: Y.68, H.72, Y.75, H.76
- Chain F: R.87, L.96, R.97, I.128, G.129, A.130, H.137
- Ligands: MG.17
9 PLIP interactions:4 interactions with chain F, 4 interactions with chain B, 1 Ligand-Ligand interactions- Hydrogen bonds: F:A.130, B:Y.68, B:H.72, H.18
- Salt bridges: F:R.87, F:R.97, F:H.137, B:H.76
- pi-Stacking: B:Y.75
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kumarevel, T. et al., Crystal Structure of the HutP-antitermination complex. To be published
- Release Date
- 2005-08-30
- Peptides
- Hut operon positive regulatory protein: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x U- U- U- A- G- U- U: 5'-R(*UP*UP*UP*AP*GP*UP*U)-3'(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x HIS: HISTIDINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kumarevel, T. et al., Crystal Structure of the HutP-antitermination complex. To be published
- Release Date
- 2005-08-30
- Peptides
- Hut operon positive regulatory protein: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B