SMTL ID : 1x3m.1

Crystal structure of ADP bound Propionate kinase (TdcD) from Salmonella typhimurium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: H.216, G.218, N.219, S.290, D.291, L.292, R.293, E.296, G.338, G.339, I.340, N.343, S.344, T.392 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.219, A:S.290, A:D.291, A:L.292, A:R.293, A:R.293, A:G.339, A:N.343 Salt bridges: A:H.216 pi-Cation interactions: A:R.293 ADP.2: 14 residues within 4Å: Chain B: H.216, G.218, N.219, S.290, D.291, L.292, R.293, E.296, G.338, G.339, I.340, N.343, S.344, T.392 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:N.219, B:S.290, B:D.291, B:L.292, B:R.293, B:R.293, B:G.339, B:N.343 Salt bridges: B:H.216 pi-Cation interactions: B:R.293

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simanshu, D.K. et al., Crystal Structures of ADP and AMPPNP-bound Propionate Kinase (TdcD) from Salmonella typhimurium: Comparison with Members of Acetate and Sugar Kinase/Heat Shock Cognate 70/Actin Superfamily. J.Mol.Biol. (2005)

Release Date

2005-09-27

Peptides

Propionate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Propionate kinase

Related Entries With Identical Sequence