SMTL ID : 1x3w.1

Structure of a peptide:N-glycanase-Rad23 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 4 residues within 4Å: Chain A: W.116, H.211, E.231, W.244 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.211, A:E.231, A:E.231, A:E.231 GLC-FRU.2: 7 residues within 4Å: Chain A: K.110, E.231, Q.232, S.233, Q.236, I.239, W.244 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.110, A:K.110, A:Q.236, A:W.244 GLC-FRU.3: 7 residues within 4Å: Chain A: R.169, Y.170, N.171, G.185, E.186, N.189, Y.204 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.171, A:N.171, A:Y.170, A:N.171, A:E.186, A:N.189, A:N.189 Water bridges: A:T.152, A:G.185

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: C.122, C.125, C.158, C.161 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.122, A:C.125, A:C.158, A:C.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J.H. et al., Structure of a peptide:N-glycanase-Rad23 complex: insight into the deglycosylation for denatured glycoproteins. Proc.Natl.Acad.Sci.Usa (2005)

Release Date

2005-06-14

Peptides

peptide:N-glycanase: A
UV excision repair protein RAD23: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

peptide:N-glycanase

UV excision repair protein RAD23

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