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SMTL ID : 1x84.1
IPP isomerase (wt) reacted with (S)-bromohydrine of IPP
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.78 Å
Oligo State
homo-dimer
Ligands
2 x
MN
:
MANGANESE (II) ION
(Non-covalent)
MN.1:
5 residues within 4Å:
Chain A:
H.25
,
H.32
,
H.69
,
E.114
,
E.116
5
PLIP interactions
:
5 interactions with chain A
Metal complexes:
A:H.25
,
A:H.32
,
A:H.69
,
A:E.114
,
A:E.116
MN.4:
5 residues within 4Å:
Chain B:
H.25
,
H.32
,
H.69
,
E.114
,
E.116
5
PLIP interactions
:
5 interactions with chain B
Metal complexes:
B:H.25
,
B:H.32
,
B:H.69
,
B:E.114
,
B:E.116
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.2:
3 residues within 4Å:
Chain A:
C.67
,
E.87
Ligands:
SBH.3
4
PLIP interactions
:
2 interactions with chain A
,
2 Ligand-Water interactions
Metal complexes:
A:C.67
,
A:E.87
,
H
2
O.1
,
H
2
O.1
MG.5:
3 residues within 4Å:
Chain B:
C.67
,
E.87
Ligands:
SBH.6
4
PLIP interactions
:
2 interactions with chain B
,
2 Ligand-Water interactions
Metal complexes:
B:C.67
,
B:E.87
,
H
2
O.4
,
H
2
O.4
2 x
SBH
:
(S)-4-BROMO-3-HYDROXY-3-METHYLBUTYL DIPHOSPHATE
(Covalent)
(Non-covalent)
SBH.3:
17 residues within 4Å:
Chain A:
K.21
,
A.34
,
F.35
,
R.51
,
K.55
,
W.58
,
C.67
,
G.68
,
H.69
,
R.83
,
E.87
,
E.114
,
E.116
,
C.118
,
E.135
,
W.161
Ligands:
MG.2
18
PLIP interactions
:
18 interactions with chain A
Hydrophobic interactions:
A:A.34
,
A:E.114
Water bridges:
A:K.21
,
A:R.51
,
A:R.51
,
A:R.51
,
A:R.51
,
A:K.55
,
A:C.67
,
A:H.69
,
A:E.135
Salt bridges:
A:K.21
,
A:R.51
,
A:K.55
,
A:K.55
,
A:H.69
,
A:H.69
,
A:R.83
SBH.6:
13 residues within 4Å:
Chain B:
K.21
,
R.51
,
K.55
,
C.67
,
G.68
,
H.69
,
R.83
,
E.87
,
Y.104
,
E.114
,
E.116
,
W.161
Ligands:
MG.5
16
PLIP interactions
:
16 interactions with chain B
Hydrophobic interactions:
B:Y.104
,
B:E.114
,
B:W.161
,
B:W.161
Hydrogen bonds:
B:H.69
Water bridges:
B:R.51
,
B:K.55
,
B:C.67
,
B:E.135
Salt bridges:
B:K.21
,
B:R.51
,
B:K.55
,
B:K.55
,
B:H.69
,
B:H.69
,
B:R.83
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Wouters, J. et al., A Crystallographic Investigation of Phosphoantigen Binding to Isopentenyl Pyrophosphate/Dimethylallyl Pyrophosphate Isomerase. J.Am.Chem.Soc. (2005)
Release Date
2005-01-25
Peptides
Isopentenyl-diphosphate delta-isomerase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Isopentenyl-diphosphate delta-isomerase
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