SMTL ID : 1xdu.2 (1 other biounit)

Crystal structure of Aclacinomycin-10-hydroxylase (RdmB) in complex with Sinefungin (SFG)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.298 ACT.3: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.298

2 x SFG: SINEFUNGIN(Non-covalent)

SFG.2: 16 residues within 4Å: Chain A: W.146, Y.171, G.190, G.191, G.192, E.213, L.214, P.217, G.239, D.240, F.241, F.242, S.255, F.256, N.260, W.261 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.190, A:D.240, A:F.241, A:F.256 Water bridges: A:W.146, A:S.255, A:N.260 pi-Stacking: A:F.241 SFG.4: 16 residues within 4Å: Chain B: W.146, Y.171, G.190, G.191, G.192, E.213, L.214, P.217, G.239, D.240, F.241, F.242, S.255, F.256, N.260, W.261 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:Y.171, B:G.190, B:D.240, B:D.240, B:F.241, B:F.256 Water bridges: B:W.146, B:S.255, B:N.260 pi-Stacking: B:F.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jansson, A. et al., Aclacinomycin 10-Hydroxylase Is a Novel Substrate-assisted Hydroxylase Requiring S-Adenosyl-L-methionine as Cofactor. J.Biol.Chem. (2005)

Release Date

2004-11-23

Peptides

Protein RdmB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein RdmB

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